Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4254g00046 ATGGTGGAAGCTCAGTTTGAGGAAGAAGATGAAGGGAGGAGACGGGAGTGGGTACAAGAAGGGCTGTGGACGGAGGAAGAAGACAGAGTTTTGATGGAATACATTAGGGTTCATGGAAGACGCCACTGGAACCGCATTTCCAAAGTCACTGGTTTAATGAGGAGTGGGAAGAGCTGCAGATTAAGGTGGCTGAACTATCTCAGCCCAAACGTCAAACATGGAAGTTTCTCTGAAGAAGAAGACGATCTCATCATTCGCCTTCACAATCTCCTTGGAAACAGGTGGTCTCTAATTGCAGGCAGGGTACCTGGAAGAACAGACAACCAAGTAAAAAATCATTGGAACACTCATTTGTGCAAGAAACTTGGTATCACTAGGCCGACAAAAAAACCCATTAAGGACAAAGTATCTTTTGAACCTAAGGCTTCACAGTCAAAAGAGACCCAAAATGTTCACATATCTTCCAATTCTATGCCTATTATTCCTCTCACTCTCAATAATAAATCCAAAGAAACTGAGATAAAAGAGCAAGGAAGCTATGTCAACAACCATCCCATGGCAAGTATCGAAGAAGCACAACATTATTGGCTACCTGCAGAAAATGATCACTTTGACCAAACTTTTATGTTTGGTCATGATCATACTTTTGTCCTACATAGTCCTCCTAGCTTGATGGAATTCTTTGATGAATTCGATATAATTTAG 705 0.4142 MVEAQFEEEDEGRRREWVQEGLWTEEEDRVLMEYIRVHGRRHWNRISKVTGLMRSGKSCRLRWLNYLSPNVKHGSFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGITRPTKKPIKDKVSFEPKASQSKETQNVHISSNSMPIIPLTLNNKSKETEIKEQGSYVNNHPMASIEEAQHYWLPAENDHFDQTFMFGHDHTFVLHSPPSLMEFFDEFDII 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4254g00046 234 Gene3D - 74 155 - -
Pral4254g00046 234 FunFam Transcription factor WER 74 152 - -
Pral4254g00046 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Pral4254g00046 234 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 19 172 - -
Pral4254g00046 234 FunFam Myb transcription factor 20 72 - -
Pral4254g00046 234 CDD SANT 75 118 IPR001005 -
Pral4254g00046 234 Gene3D - 20 72 - -
Pral4254g00046 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 67 IPR017930 -
Pral4254g00046 234 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Pral4254g00046 234 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Pral4254g00046 234 SMART sant 72 120 IPR001005 -
Pral4254g00046 234 SMART sant 19 69 IPR001005 -
Pral4254g00046 234 SUPERFAMILY Homeodomain-like 21 114 IPR009057 -
Pral4254g00046 234 Pfam Myb-like DNA-binding domain 74 118 IPR001005 -
Pral4254g00046 234 Pfam Myb-like DNA-binding domain 21 67 IPR001005 -
Pral4254g00046 234 CDD SANT 23 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4254g00046 Pral-Chr4254 324583 327238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4254g00046 11 124 MYB Transcription Factor Family AT5G40330 71.053 3.90e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4254g00046 Myb_DNA-binding 8.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4254g00046 K09422 - csin:114277501 218.394