Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4254g00023 ATGCCATATTCTGCAATGTCTTGGGTTCACTCTCAAATTCTGCAGAATAATGGTGACATGGCTGGCCAGCCTATTCTTTCTCCATCTCCTTCTTCTCCTTTGCCTTACATTTCTAACTTCCAGAAGCAAATAAGCCCATCTCCAGTTTCTTCATCTGGGAACAAAATAAGTCCAGCAGTGCTGTTTATCATAGTTGTTCTAGCTATTGTGTTTTTCATTTCGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGAACAGGTCTTCCTCATCAATTTCTCAATCCAATAGATACCCGGATATGTCTGAATCAGATGCTTACCAGAGGCAGTTACAGCAGCTGTTTCATCTTCATGATTCAGGGCTGGATCAGGCTTTCATAGACGCTCTTCCTGTCTTCTTTTATAAGGAGATAATAGGCTTGAAAGAGCCATTTGATTGTGCCGTTTGCCTTTGCGAATTCTCAGATCATGACAAGTTGAGGTTGCTGCCCATGTGCAACCATGCTTTTCACATTGACTGTATAGACACCTGGTTGTTGTCTAATTCAACCTGTCCTCTCTGTAGAGGGACTCTGTATACACCAGGATTTCCCTTTGAAAACACGGCTTTTGACTTTGAAGACCCAAGGGAAGAAGACGGGGTTTCGACAGGCACTGTTGCAGGTGACGCTGCTTCTGTTCACAAACATGCAGAAAATCACATTATGAGCGGAAGAAGGGTGTTTTCTGTCAGACTTGGAAAATTCAGAAGCTCAAATACCAGACAAGAAGTAGAAAAAAGTGAAGGAGAAAGCAGTGCTAGTAGTAGTAATTTGGATGCAAGGAGATGCTATTCAATGGGGTCTTTCCAGTACGTGGTTGCTGATTCAGATTTAAGAGTAGCTTTATGCCCCAGTAGGGGTGATGTGAGTAGTGGCAGTATGAGACAGTTGAGAGTGCGAGTAGCTCAGAATGGGAATAATCCTTCCGCTGATTCTGACTTTGAGGGCAAAAAACTCAACATTGCGAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGTTATGGTCTAAGAAGGATAAATTACCAGGTTCTTCAATAACCCATATGGGAAATTCTACTAATGTCACTCCAAATTTGCCTTGGATGAATAGAACTAGAGGTACATGA 1155 0.4225 MPYSAMSWVHSQILQNNGDMAGQPILSPSPSSPLPYISNFQKQISPSPVSSSGNKISPAVLFIIVVLAIVFFISGLLHLLVRFLIKNRSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFSDHDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYTPGFPFENTAFDFEDPREEDGVSTGTVAGDAASVHKHAENHIMSGRRVFSVRLGKFRSSNTRQEVEKSEGESSASSSNLDARRCYSMGSFQYVVADSDLRVALCPSRGDVSSGSMRQLRVRVAQNGNNPSADSDFEGKKLNIARKGESFSVSKIWLWSKKDKLPGSSITHMGNSTNVTPNLPWMNRTRGT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4254g00023 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 195 IPR013083 -
Pral4254g00023 384 SMART ring_2 148 189 IPR001841 -
Pral4254g00023 384 CDD RING-H2_EL5-like 147 190 - -
Pral4254g00023 384 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Pral4254g00023 384 Pfam Ring finger domain 147 190 IPR001841 -
Pral4254g00023 384 FunFam RING-H2 finger protein ATL46 110 195 - -
Pral4254g00023 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 349 - -
Pral4254g00023 384 MobiDBLite consensus disorder prediction 361 384 - -
Pral4254g00023 384 SUPERFAMILY RING/U-box 127 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4254g00023 Pral-Chr4254 142708 144318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4254g00023 45 361 C3H Transcription Factor Family AT2G18650 40.456 2.51e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4254g00023 - - gmx:100818135 487.263