Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4252g00004 ATGATTCTTCACCGTTCCGCTTTGATGTTGCATCTCCAACTACCATCAGTTCGATGCCGTTTTTTCTCCCATTTCAAGCATACATACTCTTTCCTCTCCACTTCTTCGCCTTCTTTGGTTAAGGTTCCCTCCATTTCGCTTTCTCGTCCTCGCCAACGGCTATTCCGGGCGTTCGAGAGTACCGTGGTGGCGGTAGCAGATGCCAAAGGGAGAGACACATTCTTGGCGGAAGAAAATGTTTCGTGGAATTCACTTGGTCTGTCTGATGCCATTTCCCGAGCTCTCTCTAGTATTGGGCTCGATAGGCCATCTCTGGTCCAGGCTTCTTCTATACCATCTGTGCTCTCTGGAAAGGATGTGGTCATTGCAGCAGAGACTGGTAGCGGCAAAACACACAGTTACCTAGTTCCTCTAATAGATAGGCTTCGAGGTTCCAAAAACAATTCTGCAAGTACTGTCCATAATCATAAAGAGTCTCTCTCCGAATTTCTGCTCGTTCTGTGTCCAAATGTACAACTCTGTGAACAGGTAGTTCAAATGGCTAGCGGTATTTGTGGGGACAATGGTGCACCGATTGTTAGTGTGGCAGCCATTTGTGGTAGACAGGGATGGCCAGTTCATGAACCAGATATCATTGTGACAACACCCGTTGCTCTTCTAAACTATGTTGAACAAAGCAGAAGCCGTCGAATGGAATTTATGCGTGGTGCTAAATATGTGGTATTTGATGAAGCTGATATGCTTCTGTGTGGGAGTTTCCAAAATAAAGTGATTCGTCTGATAAACTTGCTTCGTTTTGATGAAAAACTATTATCCCAATCAAAAGAACCAGTATCAGAGTTACCATTGGAGCTAGAATCTACCTCATCATCACACAGTGCTGTATATGGTGAACAGAAACAGCCTGCTATAGAAACCATCTCAGAAGGTGGGGATGATGATACCCATATGGTTGACACCAATAATGAAGCTGGTTCAATCAAAAGAAAAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAGCAGTACATTTTTGTTGCAGCCACACTTCCTGTGAATGGGAAGAAAACAGCTGGAGCAATGTTAAAGCATATGTTTCCTGATGTCGAGTGGGTTAGTGGAAATTATCTTCATTGTCACAATCCAAGACTGGAGCAGAGGTGGGTTAAAGTTACTGTTGACACACAGGTGGATGAACTCATACAGGCTGTGAGACAAGGTTTCAGTCAAGACTTGGATAGTTTTGGGGGCATTTCTCGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTGGACGGATCAAGGATTGGATGTTTACGCTATCATAAGGGTCGCACCTTGGATGAGAGAGCTAAGGCCTTAGTCGAATTCAGAGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATCCCAAACGTCTCACATGTTATCCAGGCAGATTTTGCTAGTTCTGCTGTAGACTTCTTGCATAGGGTTGGTAGAACTGGTCGAGCTGGTCAATTTGGACTTGTTACTAGCATGTACACTGAATCTAATAGGGAGCTTGTTGATGCGGTTCGCCGAGCAGGGGAACTTGGTCGACCTGTGGAGAGAGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGATCAAGAAGAGGGCGGCAAACCTAGTCAGAGATTCAGCCATTATTAAAGAGAGTGCAATGGCTTGA 1737 0.4473 MILHRSALMLHLQLPSVRCRFFSHFKHTYSFLSTSSPSLVKVPSISLSRPRQRLFRAFESTVVAVADAKGRDTFLAEENVSWNSLGLSDAISRALSSIGLDRPSLVQASSIPSVLSGKDVVIAAETGSGKTHSYLVPLIDRLRGSKNNSASTVHNHKESLSEFLLVLCPNVQLCEQVVQMASGICGDNGAPIVSVAAICGRQGWPVHEPDIIVTTPVALLNYVEQSRSRRMEFMRGAKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSQSKEPVSELPLELESTSSSHSAVYGEQKQPAIETISEGGDDDTHMVDTNNEAGSIKRKDWRRVRKNYERSKQYIFVAATLPVNGKKTAGAMLKHMFPDVEWVSGNYLHCHNPRLEQRWVKVTVDTQVDELIQAVRQGFSQDLDSFGGISRTMVFANTVEAVEAVAKILDGSRIGCLRYHKGRTLDERAKALVEFREKGGVLVCTDAAARGVDIPNVSHVIQADFASSAVDFLHRVGRTGRAGQFGLVTSMYTESNRELVDAVRRAGELGRPVERAFSRKRSFRNKIKKRAANLVRDSAIIKESAMA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4252g00004 578 Gene3D - 59 368 IPR027417 -
Pral4252g00004 578 CDD DEADc 91 271 - -
Pral4252g00004 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 566 IPR001650 -
Pral4252g00004 578 SMART helicmild6 434 514 IPR001650 -
Pral4252g00004 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Pral4252g00004 578 Pfam DEAD/DEAH box helicase 106 270 IPR011545 GO:0003676|GO:0005524
Pral4252g00004 578 Pfam Helicase conserved C-terminal domain 421 514 IPR001650 -
Pral4252g00004 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 526 IPR027417 -
Pral4252g00004 578 CDD SF2_C_DEAD 386 523 - -
Pral4252g00004 578 Gene3D - 387 577 IPR027417 -
Pral4252g00004 578 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 90 548 - -
Pral4252g00004 578 SMART ultradead3 99 389 IPR014001 -
Pral4252g00004 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 370 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4252g00004 Pral-Chr4252 57382 62559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4252g00004 329 540 Eukaryotic Initiation Factors Gene Family AT5G11200 26.639 6.27e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4252g00004 - - gmx:100780518 770.77