Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4252g00001 ATGGAAAAAGAACATGGCTGTGATATTTCTCCTTCATGGGATAATGGAGAAAATGGTCATTCTTCCATGGAGAAGAGGCTAAGGTTATTTGGGTTTGAGCTGAACCCATATCAGATCAACGAGGGCTGTGTCAAAGACTCCGTGGAAGGGGACGAAAGTGTGAACTCTTCAAACTCATTTTCATCAGGTGGGGAGAAAACTGAACAGCAGGAGAAGAGTTCATCTGCAACAAGAGACAACACATCAGATCATGAGAGGAAGTTCGAATGCCAATATTGTTTCAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCACCAAAATGCTCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAAGCCAGGAGGGCTAGCTTAAGCTACTACCTTCAGCCTTTTCAAAACAACCCTGGTTTTTCCTTCGACAGCTCTAATACGCCTTGGTTCTATGACCCCTCCTCTTATAACTCTGAGTTTTCTTTGTTTGAAGAACCTCAGATTAGCTTCAAAACCAAGGATCAAGATGCCATTAATGTTCTTAATGGTTTTGATCAGAAATCAAGTTGTAATTCTCATCCGTCCCTTTCCCTTCCTTCTCAGCAAGAGACTTGTATGTTCACTCTATCTCATACAGATAATAGGCCTTTCATCTTCCCTGCAGCTTCAAACCAGAGCCATAGTAACAAGGGTTTGGATCTTCAACTAGGCCTCACTTTGCAGTCAAATACGCATATTTAG 747 0.419 MEKEHGCDISPSWDNGENGHSSMEKRLRLFGFELNPYQINEGCVKDSVEGDESVNSSNSFSSGGEKTEQQEKSSSATRDNTSDHERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARRASLSYYLQPFQNNPGFSFDSSNTPWFYDPSSYNSEFSLFEEPQISFKTKDQDAINVLNGFDQKSSCNSHPSLSLPSQQETCMFTLSHTDNRPFIFPAASNQSHSNKGLDLQLGLTLQSNTHI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4252g00001 248 MobiDBLite consensus disorder prediction 1 21 - -
Pral4252g00001 248 SUPERFAMILY beta-beta-alpha zinc fingers 84 115 IPR036236 -
Pral4252g00001 248 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Pral4252g00001 248 Gene3D Classic Zinc Finger 60 137 - -
Pral4252g00001 248 MobiDBLite consensus disorder prediction 45 83 - -
Pral4252g00001 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Pral4252g00001 248 PANTHER ZINC FINGER PROTEIN 5 19 243 IPR044299 GO:0010090
Pral4252g00001 248 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4252g00001 Pral-Chr4252 10146 10971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4252g00001 85 126 C2H2 Transcription Factor Family AT1G68360 78.571 2.31e-16 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4252g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4252g00001 - - qsa:O6P43_033118 280.411