Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4250g00031 ATGAAGAGGTCCAGAGATGATGGTTATATGAGCTCTCAACTTAAACGGCCCATGATGTCTTCCCGGGGAGAAACATCGGGGCAGCCCCAGATGATGGATGGAGGTGCTCAAAAACTCACAACAAATGACGCCTTAGCATATCTCAAGGCAGTAAAGGAAATTTTTCAAGATAAAAGGGAAAAATATGATGATTTTTTAGAAGTCATGAAGGATTTCAAGGCTCAAAGGGTTGATACTGTGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAGAGATCTAATTTTGGGATTTAACACCTTCTTGCCGAAGGGGTATGAAATCACACTTCCTTTGGAGGATGAACAACCTGTACAAAAGAAGCCTGTTGAATTTGAAGAGGCTATAAATTTTGTCAACAAAATTAAGTCTCGCTTTCAAGGTGATGATCATGTCTACAAGTCGTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCTCTGAGGTCTACCAGGAGGTTGCTTCACTTTTCCATGACCACCCAGATCTTCTTGATGAGTTTACTCACTTCCTTCCTGATACTTCAGGAACGGCATCTACACATTATGCTCCTTCCCGGAGCTCTATGCTTCGGGATCGGGGCTCTGCAGTGCCAAGGCAAATGAGTGTTGAAAAGAGAGAAAGGACTGTGGATTCTCATGGTGATCATGACCTTAGTGTTGATCGTTCTGACCCAGATCATGACAGAGTTGTGATTAAGGCAGAAAAGGAGCAGAGGAGGCGTGCTGAGAAGGAAAAGGACCTCAGAGAAGAGAGGGATAGGAGAGATGGGGAACGGGATGATAGAAATTATGGGCCTGATAGTAGCCGAGATTTTAACATGCCGCGCTTCCCCCCCAAACGGAAATCTGGTCGTAGGATTGATGACACTGGTGCTGAACCATTGCATCAAGGTGGTGACTCTGATGAAAATTTGAGCATGCGCCCGATGTCATCCGCCTGTGATGACAAAAGTTCTGTGAAGAGTATATATAGTCAAGAGTTTGCTTTCTGTGAAAAAGTCAAGGAGAAATTGCGAAATCACGATGTTTATCAGGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAAATAATTACCCGGCAAGAATTGGAATCCTTGGTGGGTGATTTACTGGGAAAATATCCAGACCTTATGGAGGGGTTTAATGAATTTTTGTCCAGATGTGAGAAGAATGATGGATTCCTTGCCGGTGTAATGAATAAAAAGTCCTTTTGGACTGAAGAGATTGCATCTAAGCCAGCAAAGGCAGAGGACAAGGATAGAGATAGAGCTCGAGATCATGATAGGGATGATCGGGTTAAAGAAAGAGATCGCGAACTGCGAGAAAGGGACAAATCTTCTCCTTTTATTAGCAAGGATGTATCAGGTCCTAAGATGTATCCATTTTCCAGCAAGGATAAATATTATGCAAAGCCTATAAACGAGCTAGACCTTTCTAACTGTGAGCAATGCACTCCCAGCTACCGTCTCCTACCAAAAAATTATCCAACACCCACGGCCAGCCAGAGAACTGAGCTTGGTGCTGAATTATTGAATGATCATTGGGTTTCTGTTACTTCAGGAAGCGAAGATTATTCTTTTAAGCACATGCGCAAAAATCAGTATGAAGAGAGCCTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACGACAAAGAGAGTGGAAGAGCTCTTAGAAAAGATCAATAATAATATTATTAAAGCAGACAGCCCTATTCGTATTGAGGAGCACTTGACAGCTCTAAATCGAAGGTGCGTTGAACGATTATATGGTGATCATGCACTTGATGTGATGGAGGTGTTGAGAAAGAATGCACCTCTAGCTTTACCTGTCATATTAAGCCGTTTGAAGCAGAAACAAGAAGAGTGGGCTAGGTGTCGTGCAGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAATTATCATAAATCTCTTGATCATCGCAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACAAAAGCCTTACTGGCTGAAATAAAAGAAATTAGTGAGAAGAAGCACAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGACCTATTATTCCAAATTTGGAATTTGAGTATCCAGACCCAGATATTCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTCATGAAGATTTGGACAACGTTTTTAGAACCAATGCTTGGCGTTCCTTCTCGACCCCAGGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAGCATAATTCTGTGAAAGGTGGCACTGGCAATGCAAGTTTTGGTGGCAGTGATAGTAGTCCTGTTGTAGTTGCAAATGTAATGAACTCAAGACAATTAAATACATCTGGAAATGGGGATGAAAGTATTTCATTAGAAAAGTCGAATTCCAAGACTGAAACTTTGGACTACAGTAAACGTCATGAGGCAACGCATGTAAATTCATCCATGCATGATGAGGTATCAGTCGCCAACAAACAAGGTCATTCCAACGAGCGGTTAGCAAATGTGAATGCCTCGATGGCTTCTGGAATGGAGCAAAGTAATGGGAGAACAAATATAGATAATGCATCAGGGCTTACTGCTACTCCATCGAGACCTGGTAATGTTGCAGCTGAGGGAGGACATTTTCCTTCAACAGAGGTTGGCGATTCTACAAGACCAGCTACACCTATAAATGGGGCCATCACAGAAGGCAACAAAGTTCACAGATACCAAGAAGAATCTACTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAACTATCTCCTAATGGAGATTTTGAGGATAACTTTGCAGTATATGGAGATACTAGTTTAACAGCAGTAGGGCATAAAGGGAAGAATGGTGATGTGAGTATGCAATACCAAAATAAATGTGAAGAAGGTTGTGGTGAGGCAGCAGGAGAAAATGATGCTGATGTTGATGAAGGTGAAGGAAGTCCTCATAGGTCATCACAGGACAGTGAGAATGCTTCTGAAAATGGTCATGTTTCGGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTATCAAGAAGAGCATGAGGAGGATGAGGAACATGATAACAAGGTTGAGAGTGAGGGTGAAGCTGAAGGAATGGCTGATGCCAATGACGTGGAAGGTGATGGAATCTCATTGCCATTTTCGGAACGCTTTTTGCTATCTGTAAAGCCTCTGGCAAAGCATGTTCCCCCTATGTTGCATGAGAAAGAGAGGGTTTCTAGAGTTTTTTATGGAAATGATTCCTTTTATGTGCTTTTTAGGCTTCACCGAACATTGTATGAGAGGATACAATCAGCAAAGTTGAACTCATCATCTGCGGATAGGAAGTGGAGGGCTTCAAATGATGCAAACTCTAATGATCAATATGGCAGATTCATGACTGCCCTTTATAACCTACTGGATGGTTCTTCTGACAACACAAAGTTTGAGGATGACTGCCGAGCTATTATTGGAACTCAGTCATATGTGCTATTTACATTAGACAAGTTGATATATAAGCTTGTTAAACAGCTGCAAGCAGTTGCTACGGATGAGATGGATAACAAGCTTCTCCAACTTCATTCATACGAGAAATCAAGAAAATCTGGAAGATTTTTTGATATAGTTTATTATGAAAATGCTCGAGTTCTTCTTCATGATGAGATCATATACCGTATTGAATGTTCATCTACACCAACACGATTATCTATTCAGTTGATGGACTATGGACATGATAAACCTGAGGCAACTGCTGTGTCTATGGACCCTAACTTCTCAGCCTATTTGCACAATGACTTCCTTTCTGTTTTTCCCGAAAAAAAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGCAAATATGCCTGTGGTGATGAACTTTCAAGTCAGGCCATGGAAGGATTGCAAGTTATTAATGGTCTGGAGTGCAAGATAGCTTGCAGTTCATCTAAGGTTTCATACGTTTTAGATACAGAAGACTTTTTATTTCGAATGAGAAGGAAAAGGAAAGCTTTGCATCAGAACAGATTATGTCATGAGCAGACAAATTCTAAAAACGTTTGTTCAAGGAGAGGACAGCGGTTCCGGAGATTATTTTCCATCACGTGA 4221 0.4103 MKRSRDDGYMSSQLKRPMMSSRGETSGQPQMMDGGAQKLTTNDALAYLKAVKEIFQDKREKYDDFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPVQKKPVEFEEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLDEFTHFLPDTSGTASTHYAPSRSSMLRDRGSAVPRQMSVEKRERTVDSHGDHDLSVDRSDPDHDRVVIKAEKEQRRRAEKEKDLREERDRRDGERDDRNYGPDSSRDFNMPRFPPKRKSGRRIDDTGAEPLHQGGDSDENLSMRPMSSACDDKSSVKSIYSQEFAFCEKVKEKLRNHDVYQEFLKCLHIYSREIITRQELESLVGDLLGKYPDLMEGFNEFLSRCEKNDGFLAGVMNKKSFWTEEIASKPAKAEDKDRDRARDHDRDDRVKERDRELRERDKSSPFISKDVSGPKMYPFSSKDKYYAKPINELDLSNCEQCTPSYRLLPKNYPTPTASQRTELGAELLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKADSPIRIEEHLTALNRRCVERLYGDHALDVMEVLRKNAPLALPVILSRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRPIIPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKHNSVKGGTGNASFGGSDSSPVVVANVMNSRQLNTSGNGDESISLEKSNSKTETLDYSKRHEATHVNSSMHDEVSVANKQGHSNERLANVNASMASGMEQSNGRTNIDNASGLTATPSRPGNVAAEGGHFPSTEVGDSTRPATPINGAITEGNKVHRYQEESTGHFKSEREEGELSPNGDFEDNFAVYGDTSLTAVGHKGKNGDVSMQYQNKCEEGCGEAAGENDADVDEGEGSPHRSSQDSENASENGHVSGSESADGEECYQEEHEEDEEHDNKVESEGEAEGMADANDVEGDGISLPFSERFLLSVKPLAKHVPPMLHEKERVSRVFYGNDSFYVLFRLHRTLYERIQSAKLNSSSADRKWRASNDANSNDQYGRFMTALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLHSYEKSRKSGRFFDIVYYENARVLLHDEIIYRIECSSTPTRLSIQLMDYGHDKPEATAVSMDPNFSAYLHNDFLSVFPEKKKSGIFLKRNKRKYACGDELSSQAMEGLQVINGLECKIACSSSKVSYVLDTEDFLFRMRRKRKALHQNRLCHEQTNSKNVCSRRGQRFRRLFSIT 1406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4250g00031 1406 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Pral4250g00031 1406 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Pral4250g00031 1406 Pfam Paired amphipathic helix repeat 361 405 IPR003822 GO:0006355
Pral4250g00031 1406 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 1050 1068 - -
Pral4250g00031 1406 FunFam Paired amphipathic helix protein SIN3 337 410 - -
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 1008 1085 - -
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 1 34 - -
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 435 478 - -
Pral4250g00031 1406 SUPERFAMILY PAH2 domain 339 406 IPR036600 GO:0006355
Pral4250g00031 1406 SMART hdac_interact2seq4b 500 600 IPR013194 -
Pral4250g00031 1406 Coils Coil 251 280 - -
Pral4250g00031 1406 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 823 842 - -
Pral4250g00031 1406 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 195 332 - -
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 823 846 - -
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 435 469 - -
Pral4250g00031 1406 Gene3D Paired amphipathic helix 337 410 IPR036600 GO:0006355
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 945 968 - -
Pral4250g00031 1406 ProSiteProfiles PAH domain profile. 339 408 IPR003822 GO:0006355
Pral4250g00031 1406 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Pral4250g00031 1406 SUPERFAMILY PAH2 domain 121 192 IPR036600 GO:0006355
Pral4250g00031 1406 Coils Coil 573 593 - -
Pral4250g00031 1406 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 945 972 - -
Pral4250g00031 1406 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 293 315 - -
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 14 34 - -
Pral4250g00031 1406 Pfam Sin3 family co-repressor 502 593 IPR013194 -
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 217 286 - -
Pral4250g00031 1406 MobiDBLite consensus disorder prediction 1029 1044 - -
Pral4250g00031 1406 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Pral4250g00031 1406 Pfam C-terminal domain of Sin3a protein 1121 1366 IPR031693 -
Pral4250g00031 1406 PANTHER SIN3B-RELATED 37 1265 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4250g00031 Pral-Chr4250 217278 228256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4250g00031 19 120 WRKY Transcription Factor Family AT4G12020 55.769 8.82e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral4250g00031 Sin3a_C 4.1e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4250g00031 K11644 - mnt:21394293 2041.54