Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4250g00026 ATGATCTCCAAAGCACTCATTCACAACATAAACGTGAGCCCCATTTCGTTCATCATGAACTTTATCTTTCTCGCAGCTTCAATCTTTCTCCTTTATTCACCATCTCTTTGTGTTTCCATCGAGGACGACGTGGTTTGCCTCGAAGGTGTAAAGAACTCATTTTCTGACCCAAATGGAAAACTCAGCTCTTGGAGCTTCAGCAACACTTCTGTATCCTCAATCTGCCAGCTCGTCGGAGTTTCTTGCTGGAACGAGAAGGAGACCCGCATCATCAGCCTCCAGCTCCGTGACATGCAGCTCGCCGGAAAGCTCCCTGAGTCGCTCAAGTATTGCCGGAGTCTCCAGACCCTCGTACTCTCTGGTAACGCTCTCTCTGGTTCGATTCCTCCTTATATCTGTAGCTGGTTGCCTTATTTGGTGACCCTAGATCTCTCCGGTAACCAAATCTCGGGTTCTATCCCACCCGAGATTGTAAATTGCAAATTCTTGAATACCCTTACTCTGAACGATAACAAATTATCGGGTTCGATCCCTTACGAACTGAGTCGGCTTGACCGATTGAAGAAGCTCTCTGTTGCCAATAACGATCTCTCGGGTTCCATTCCACCGGATTTGTCCAAATTTGACGCAGCTGATTTTGATGGGAACAGTGGATTATGCGGGAAGCCAGTTGGATCAAAGTGTGGTGGATTGAGTCGTAAAAGTCTCGGGATTATCATTGCTGCTGGTGCGATTGGAGCCTTGGGATCTTTAGTTGTGGGTTTCGCTCTCTGGTGGTGGTTCTTCCTGAGAGTCAGTGAGCAAAAGAAAGAGTATAGTGGTTCTGGTGGCGGGAAGCAAGTGGGCGATTGGATTGATTTGTTAAAGTCACACAAGCTTGCTCAAGTTTCTTTGTTCCAGAAACCCATTGTGAAGGTCAGATTAGCTGATTTACTAATCGCTACTAATAGCTTTCATCCGGAAAATATTGTGATTTCTAGTAGAACAGGAGTCTCTTATAAGGCAGTTTTGCGTGATGGGTCAGCTCTTGCGGTGAAGAGGCTTAATTCTTGCAAACTTGCTGAGAAGCAATTTAGATCAGAGATGAACAGGTTGGGGCAGCTCAGACACCCTAATTTGGTGCCTCTGTTGGGTTTCTGTATGGTGGAAGAGGAGAAGCTTTTGGTGTACAAGCACATGTTCAATGGGACCTTGTATTCTCAGTTGCATAAAACTGGTCATGCTAATAATAGTCAATATATTTTTCTGGACTGGCCAACGAGGCTGAGAATTGGGATAGGTGCTGCCAGAGGACTTGCTTGGCTTCACCATGCTTGTCAACCTCCCTATATTCACCAGAATATCAGCTCAAATATAGTCCTTCTTGACTATGATTTCGAAGCTCGAATAACGGGTTTCGGATTGGCGAGGCTTGTGGCCACTCGCGATCCCAATGATAGCTCCTTTGTGAATGGCGACCTGGGTGAATTTGGTTATGTTGCTCCTGAGTACTCAAGCACCATGGTTGCTTCCATGAAAGGCGATGTTTATGGTTTTGGAGTTGTTCTCTTCGAATTGGTCACTGGGATGAAGCCGGTGGAAGTAAACACGGGAGGGGAAGGATTCAAAGGGAATTTAGTGGATTGGGTCAATTGGTTAACAGTGACAGGAAGAACTAAAGAAGCCATAGATAAAGCTTTGTTAAATGAAAATCCTGAACATGGTGATGAATTTATGCAGTTCATGCGGGTTGCCTTATCTTGTGTTGTCTCTAGACCCAAAGATAGACCTTCCATGTACCAAGTTTTCTCCTCACTGAAGAGCATGGCTGAGAAACATGGTTTTGCAGATCAGTATGATGACTTCCCAGTTGTCTCTGGCAAAGAAGACTCTGACTACAATAAGAATTAG 1890 0.4519 MISKALIHNINVSPISFIMNFIFLAASIFLLYSPSLCVSIEDDVVCLEGVKNSFSDPNGKLSSWSFSNTSVSSICQLVGVSCWNEKETRIISLQLRDMQLAGKLPESLKYCRSLQTLVLSGNALSGSIPPYICSWLPYLVTLDLSGNQISGSIPPEIVNCKFLNTLTLNDNKLSGSIPYELSRLDRLKKLSVANNDLSGSIPPDLSKFDAADFDGNSGLCGKPVGSKCGGLSRKSLGIIIAAGAIGALGSLVVGFALWWWFFLRVSEQKKEYSGSGGGKQVGDWIDLLKSHKLAQVSLFQKPIVKVRLADLLIATNSFHPENIVISSRTGVSYKAVLRDGSALAVKRLNSCKLAEKQFRSEMNRLGQLRHPNLVPLLGFCMVEEEKLLVYKHMFNGTLYSQLHKTGHANNSQYIFLDWPTRLRIGIGAARGLAWLHHACQPPYIHQNISSNIVLLDYDFEARITGFGLARLVATRDPNDSSFVNGDLGEFGYVAPEYSSTMVASMKGDVYGFGVVLFELVTGMKPVEVNTGGEGFKGNLVDWVNWLTVTGRTKEAIDKALLNENPEHGDEFMQFMRVALSCVVSRPKDRPSMYQVFSSLKSMAEKHGFADQYDDFPVVSGKEDSDYNKN 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4250g00026 629 CDD STKc_IRAK 326 602 - -
Pral4250g00026 629 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 40 229 - -
Pral4250g00026 629 Pfam Leucine rich repeat N-terminal domain 41 83 IPR013210 -
Pral4250g00026 629 ProSiteProfiles Protein kinase domain profile. 318 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4250g00026 629 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 51 205 - -
Pral4250g00026 629 Pfam Protein tyrosine and serine/threonine kinase 341 598 IPR001245 GO:0004672|GO:0006468
Pral4250g00026 629 SUPERFAMILY L domain-like 37 216 - -
Pral4250g00026 629 Gene3D Transferase(Phosphotransferase) domain 1 393 620 - -
Pral4250g00026 629 Gene3D Phosphorylase Kinase; domain 1 279 392 - -
Pral4250g00026 629 Gene3D Ribonuclease Inhibitor 41 230 IPR032675 -
Pral4250g00026 629 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 279 392 - -
Pral4250g00026 629 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 393 621 - -
Pral4250g00026 629 SUPERFAMILY Protein kinase-like (PK-like) 296 599 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4250g00026 Pral-Chr4250 168901 171091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4250g00026 21 624 Receptor kinase-like Gene Family AT1G27190 65.563 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Pral4250g00026 PK_Tyr_Ser-Thr 4.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4250g00026 - - qsa:O6P43_025373 916.376