Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4250g00017 ATGGATCGAAATTCCAGAGCCAGCGTTCAAATACCTTCGTCTCGAACGGGTGGACTCAGTGGAGTGGAGCCTCAGGCCCCGGACAAGCGCACCATTTTCTGCAATGATCGCAAGGCCAACCTTGCCAGTCCATTCATGAGCAACTCGATATCAACTACAAAATATAACATCTTCACTTTCTTGCCAAAAGGGCTATTTGAACAGTTCAGGCGGGTTGCTAATCTCTATTTTCTAGCAATCTCAATTTTGGCAGCAACTCCAATCAGTCCTATATCTCCGATAACTAATGTGGTTCCTCTGTCTCTGGTGCTTCTTATCTCTCTTATTAAGGAAGCTTTTGAGGACTCGAAACGTCTTCAAAATGACAAGGTCATAAACAATAGAATGATAGATGTTTTGCAAGATCAAACATGGGAGTCCATAGCCTGGAAAAATCTGCAGGTTGGAGACATTGTCAAGGTTAAGCAGGATGGATTCTTTCCAGCAGATCTGCTTTTCCTGGCCAGTACGAATGCAGATGGTGTCTGCTATATTGAGACTGCTAATTTGGACGGGGAAACCAATCTCAAGATCAGGAAAGCATTGGAGAAGACTTGGGATTACCTGACTCCAGAGAAGGCATCTGAGTTTCAAGGTGAAATTCAGTGTGAACAACCAAACAATTCATTGTACACCTTCACTGGAAATCTTATTATTCAAGCACAAACACTACCTCTCAGTCCAAACCAAATCTTGCTGCGAGGCTGCAGTCTAAAAAATACAGGGTATATTGTTGGAATAGTTATCTTTACAGGGCATGAAACAAAGGTGATGATGAATTCCATGAATGTACCTTCTAAAAGAAGTACATTGGAGAGGAAGCTTGATAAACTCATACTCGCTCTATTTGCAACTCTCTTTGGAATATGTTTGATTGGAGCCATAGGCAGTGGCATCTTTGTAAACAACAAATATTTCTATTTACGCCTTGATGTAGGTGGTGAGGGCTCAGCACAGTTCAACCCAAGTAACAGATTTCTGGTTATTGTCCTGACTTTATTTACCCTCATCACTCTCTATTCACCACTCATCCCTATATCACTTTATGTGTCAATAGAGATGATTAAATTTATTCAGTCTACTCAATTTATCAACAAGGACTTGTGCATGTACCATAAGGACACCGATACCCCAGCATTGGCCAGGACATCTAATCTAAATGAAGAACTTGGGCAGGTGGAATACATCTTCTCTGACAAGACAGGAACTTTAACAAGAAACTTAATGGAGTTTTTTAAGTGTTCAATTGGAGAACAAGTCTATGGAACAGGTGTTACTGAAATTGAGAGGCAAATAGCAGAGCGTAATGGGATGAAAGTTGAGGAAAATAAATCAGACACTGCAGTGCAAGAGAGGGGCTTTAATTTTGATGATGATCGGCTTATGCAAGGATCTTGGAGGAATGAGCCTAATCCTAACATTTGTAAGGAATTCTTCAGATGCCTTGCTATATGCCATACTGTACTCCCTGAGGGCGATGAGTCCCCACAAAAAATCACGTATCAAGCCGCCTCGCCTGATGAGGCTGCTTTGGTCATTGCTGCAAAGAACTTTGGTTTCTTCTTTTACAGACGCACACCAACAACAATATATGTCCGCGAATCCCATGTTGAAAAGAAGGGTAAAGTCCAAGATGTTCCTTACGAAATTTTGAATGTGCTTGAATTTAACAGTACAAGAAAGCGCCAGTCTGTTATATGCCGTTATCCAGATGGGAAGCTTGTATTGTACTGTAAGGGTGCTGATACGGTAATCTACGAGAGACTGGCCAATGGTGCTGATGATATAAAGAAATTGACCAGGGAGTATTTGGAACAATTTGGAGCTGCTGGTTTACGTACATTATGCCTGGCCTACAAAGAATTACGTAATCATGTATATGAAAGTTGGAACGAAAAGTTCATCCAGGCCAAGTCTTCTCTAAGTGATCGTGACAAGAAGTTGGATGAGGTGGCGGAACTTATAGAAACTGATCTGATTTTGATTGGTAGCACTGCCATAGAGGACAAGCTTCAAGAGGGAGTTCCAGCATGTATAGAGACTCTTCAAAGAGCTGGAATTAAAATTTGGGTGCTTACTGGAGACAAGATTGAAACAGCAATAAATATAGCCTATGCATGCAATTTAATATCCAATGAGATGAAAAAATTTATCATCAGCTCAGAAACTGATGCAATTAGAGAAGTTGAAGAAAGGGGTGACCCAGTGGAAATTATGCATTTTATTAGAGAACAAGTTAAGAAAGAGTTGAAGTCGTTCCTTGAGGAAGCACAGAGCTATCTACGCTCTCTAAATGGACAAAAATTAGCACTTGTAATTGATGGGAAAAGTCTAATGCATGCATTAGACCCAAGTTTAAGAGTGATGCTTCTGAATTTGGGTTTGAATTGTCATGCGGTTGTTTGCTGTCGAGTTTCTCCTTTACAAAAAGCACAGGTCACAAGGCTAGTCAAGAAAGGTGCACGTAAAATAACATTAAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTATTGGCATAAGTGGGATGGAGGGGATGCAAGCAGTGATGGCTAGTGATTTTGCCATTGCACAGTTTCGTTTCCTTGCAGATTTGCTACTTGTCCATGGCCGCTGGTCATACCTTCGAATATGCAAGGTTATTACATACTTCTTTTATAAGAATCTCACATTCACTCTTACTCAGTTTTGGTTTACTTTTCAAACGGGGTTTTCTGGTCAGAGGTTCTATGATGATTGGTTTCAGTCATTATATAATGTGATCTTCACAGCATTGCCTGTAATTGCTCTTGGACTATTCGACAAGGATGTCAGTGCATCTCTATCCAGGAAGTATCCTGGACTTTACATGGAGGGAATAAGGAATGTCTTCTTCAAATGGAGTGTTGTGGCGACATGGGCCATTTTGTCGGTCTGCCAGTCTTTGATATTGTTCTATTTTGTGATTTTGTCAAGTTCAGGTGCTAAAAATTCAGCAGGAAAAACATTTGGACACTGGGATGTCAGTACAATGGCCTATACATGTGTTATTGTAACTGTCAATTTACGACTACTTATGACCTGTAATTCGGTCACAAGATGGCACTTAATTGGTGTTGGTGGAAGCATATTAGCATGGTTTATTTTCGTCTTTATATATTCAGTGGTCAGACTGGAGAATGTATATTTTGTGATATATGTCTTGATGAGTACAATCTATTTCTACCTCACGCTTCTGCTTGTTCCCATTGCTGCCCTCTTGGGTGACTTCATCTTCCAAGGGATTCAGAGATGGTTCTTCCCCTATGATTATCAGATTATTCAGGAGATTCACAGACACGAACCGGATACTGGCAACAGGCAACAGTTGCTGGAGGTGGGGAGTCATTTGACGCCATCAGAGGCGAGGAGCTATGCCATGTCTCAACTGCCTCGTGAGGTATCAAAGCACACAGGCTTTGCATTTGATTCACCTGGCTACGAGTCCTTTTTCGCTTCACAGTTCGGTGTGTATGCCCCGCAAAAGGCATGGGATGTTGCTAGACGAGCTAGCAGGTTTCGAGCACCAAAGACAGGCCGCAAAAAATAG 3627 0.4138 MDRNSRASVQIPSSRTGGLSGVEPQAPDKRTIFCNDRKANLASPFMSNSISTTKYNIFTFLPKGLFEQFRRVANLYFLAISILAATPISPISPITNVVPLSLVLLISLIKEAFEDSKRLQNDKVINNRMIDVLQDQTWESIAWKNLQVGDIVKVKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFQGEIQCEQPNNSLYTFTGNLIIQAQTLPLSPNQILLRGCSLKNTGYIVGIVIFTGHETKVMMNSMNVPSKRSTLERKLDKLILALFATLFGICLIGAIGSGIFVNNKYFYLRLDVGGEGSAQFNPSNRFLVIVLTLFTLITLYSPLIPISLYVSIEMIKFIQSTQFINKDLCMYHKDTDTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGEQVYGTGVTEIERQIAERNGMKVEENKSDTAVQERGFNFDDDRLMQGSWRNEPNPNICKEFFRCLAICHTVLPEGDESPQKITYQAASPDEAALVIAAKNFGFFFYRRTPTTIYVRESHVEKKGKVQDVPYEILNVLEFNSTRKRQSVICRYPDGKLVLYCKGADTVIYERLANGADDIKKLTREYLEQFGAAGLRTLCLAYKELRNHVYESWNEKFIQAKSSLSDRDKKLDEVAELIETDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLISNEMKKFIISSETDAIREVEERGDPVEIMHFIREQVKKELKSFLEEAQSYLRSLNGQKLALVIDGKSLMHALDPSLRVMLLNLGLNCHAVVCCRVSPLQKAQVTRLVKKGARKITLSIGDGANDVSMIQAAHVGIGISGMEGMQAVMASDFAIAQFRFLADLLLVHGRWSYLRICKVITYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIALGLFDKDVSASLSRKYPGLYMEGIRNVFFKWSVVATWAILSVCQSLILFYFVILSSSGAKNSAGKTFGHWDVSTMAYTCVIVTVNLRLLMTCNSVTRWHLIGVGGSILAWFIFVFIYSVVRLENVYFVIYVLMSTIYFYLTLLLVPIAALLGDFIFQGIQRWFFPYDYQIIQEIHRHEPDTGNRQQLLEVGSHLTPSEARSYAMSQLPREVSKHTGFAFDSPGYESFFASQFGVYAPQKAWDVARRASRFRAPKTGRKK 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4250g00017 1208 FunFam Phospholipid-transporting ATPase 106 275 - -
Pral4250g00017 1208 SUPERFAMILY Calcium ATPase, transduction domain A 127 271 IPR008250 -
Pral4250g00017 1208 MobiDBLite consensus disorder prediction 1 20 - -
Pral4250g00017 1208 ProSitePatterns E1-E2 ATPases phosphorylation site. 412 418 IPR018303 -
Pral4250g00017 1208 Pfam Phospholipid-translocating ATPase N-terminal 32 96 IPR032631 -
Pral4250g00017 1208 SFLD p-type atpase 392 892 IPR044492 -
Pral4250g00017 1208 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 679 IPR023299 GO:0000166
Pral4250g00017 1208 Gene3D - 671 881 IPR023214 -
Pral4250g00017 1208 Coils Coil 756 776 - -
Pral4250g00017 1208 PRINTS P-type cation-transporting ATPase superfamily signature 841 860 - -
Pral4250g00017 1208 PRINTS P-type cation-transporting ATPase superfamily signature 410 424 - -
Pral4250g00017 1208 FunFam Phospholipid-transporting ATPase 518 673 - -
Pral4250g00017 1208 SFLD Haloacid Dehalogenase 392 892 - -
Pral4250g00017 1208 Pfam E1-E2 ATPase 128 319 - -
Pral4250g00017 1208 CDD P-type_ATPase_APLT_Dnf-like 47 1001 - -
Pral4250g00017 1208 NCBIfam HAD-IC family P-type ATPase 814 920 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4250g00017 1208 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 28 1162 - -
Pral4250g00017 1208 FunFam Phospholipid-transporting ATPase IC 407 419 - -
Pral4250g00017 1208 Pfam Cation transport ATPase (P-type) 507 601 - -
Pral4250g00017 1208 SUPERFAMILY Calcium ATPase, transmembrane domain M 46 1114 IPR023298 -
Pral4250g00017 1208 Gene3D - 524 661 IPR023299 GO:0000166
Pral4250g00017 1208 FunFam Phospholipid-transporting ATPase 674 881 - -
Pral4250g00017 1208 MobiDBLite consensus disorder prediction 1 26 - -
Pral4250g00017 1208 SUPERFAMILY HAD-like 398 883 IPR036412 -
Pral4250g00017 1208 Gene3D - 107 274 - -
Pral4250g00017 1208 Pfam Phospholipid-translocating P-type ATPase C-terminal 869 1114 IPR032630 -
Pral4250g00017 1208 NCBIfam phospholipid-translocating P-type ATPase 45 1122 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4250g00017 Pral-Chr4250 119861 134874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4250g00017 4 1207 Primary Pumps ATPases AT1G59820 75.537 0.0 1931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4250g00017 K14802 - gmx:100815547 2001.87