Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4250g00013 ATGATGAACGAGGGTTCGTTTGGGAATGGGAACGCTCATACGGCGTCGCATAACTTGGCCGACATCCGGCAGTTCCCGACGAACGGCGGTGCTGGTCTCGGGGAGTCCAGGGGAGGGTTGGGCTTGAGGAGGCCGCAGTTCGGACAAAATTTGGGGCAGTTTGGGGCGTTTACATCGGGTTCGAATCCGAATGGCCCGGGTATTGACCCGAGCTGTTCGGACCAGGAAGGAAACGGGGTCAATAGGAAGAAGCGCGACTCCGAGGATGAATTGGCGAAAGGCGTCTCTACCACCAGCAACGGTGGCATTGGCGATAGCAATGGCGTGAATGATGGTGATGGAAAACGGCTTAAAGTATGTGGAAATCGGAATGAGAGCCTTGAAACGAAAGCTGAAACAGAAACCGGCTCAGAAAAGCCAGCGGAGCAAAGTACTCAGCCAGCTTCTGAGCCTCCTAAGCCGGCTTACATCCATGTACGGGCGAGAAGGGGTCAAGCTACTGATAGTCACAGTCTAGCGGAAAGAGCGAGGAGGGAAAAGATAAGCGAGAGGATGCAAATTCTTCAGGAGTTGGTTCCTGGTTGTGACAAGGTTACTGGGAAAGCGTTGGTCCTCGATGAGATAATAAATTACATTCAGTCGCTACAGCGCCAAGTTGAGTTCTTGTCAATGAAGCTTGAAGCTGTAAATTCAAGTGTGAACCCTGCTGGCATTGAAATTTTTCATCCAAAAGATAGAAAGTCTGAAATTGAGGAGGGCGTGAATATGGACAGGGAGAATCAGGAAAGGGTTTTGATTTCCACTTGA 807 0.5068 MMNEGSFGNGNAHTASHNLADIRQFPTNGGAGLGESRGGLGLRRPQFGQNLGQFGAFTSGSNPNGPGIDPSCSDQEGNGVNRKKRDSEDELAKGVSTTSNGGIGDSNGVNDGDGKRLKVCGNRNESLETKAETETGSEKPAEQSTQPASEPPKPAYIHVRARRGQATDSHSLAERARREKISERMQILQELVPGCDKVTGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSSVNPAGIEIFHPKDRKSEIEEGVNMDRENQERVLIST 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4250g00013 268 CDD bHLH_AtBPE_like 156 235 - -
Pral4250g00013 268 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Pral4250g00013 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 233 IPR036638 GO:0046983
Pral4250g00013 268 SMART finulus 171 221 IPR011598 GO:0046983
Pral4250g00013 268 Gene3D - 162 236 IPR036638 GO:0046983
Pral4250g00013 268 MobiDBLite consensus disorder prediction 78 92 - -
Pral4250g00013 268 MobiDBLite consensus disorder prediction 51 77 - -
Pral4250g00013 268 Coils Coil 212 232 - -
Pral4250g00013 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
Pral4250g00013 268 MobiDBLite consensus disorder prediction 116 137 - -
Pral4250g00013 268 MobiDBLite consensus disorder prediction 1 23 - -
Pral4250g00013 268 MobiDBLite consensus disorder prediction 1 153 - -
Pral4250g00013 268 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 74 249 IPR024097 GO:0006355
Pral4250g00013 268 FunFam Basic helix-loop-helix transcription factor 162 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4250g00013 Pral-Chr4250 112840 116783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4250g00013 1 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 53.200 9.06e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4250g00013 HLH 6.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4250g00013 - - qsa:O6P43_025379 291.197