Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4250g00012 ATGATGAACGAGGGTTCGTTTGCGAACGGGAACGCCAATACGGCATCGTATAACTTGGCCGAGATCTGGCAGTTCCCCATGAACGGCGGTGCGGGTCTCGGGGAGTCTGGAGGAGGGTTGGCCTTGAGGAGGCCGCAGTTCGGACAAAATTTGGGGCTGTTTGGCGAGTTTACATCGGGTTCGAACCCGAATGGCCCGGGTATTGACCCGAGCTGTTCGGACCAGGGAGCGAACGGGGTCAATAGGAAGAAGCGCGATTCCGAGGATGAATCGGTGAAAGGCGTCTCCACCACGAGCAACGGTGGCATTGGCAATAGCAATGGCGTGAATGATGGTGATGGAAAACGGCTTAAAGTATCTAGGAATAGGAATGAGAGCCCTGAAACTAAAGCTGAAACAGAAACCAGTTCAGAAAAGCCAGCGGAGCAAAGTACTCAGCCAGCTTCGGAGCCTCCTAAGCCGGCTTACATCCATGTACGGGCGAGAAGGGGTCAAGCTACTGATAGTCACAGTCTAGCGGAAAGAGCGAGGAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAGGAGTTAGTTCCTGGTTGTAACAAGGTTATTGGGAAAGCGTTGGTCCTCGATGAGATAATAAATTACATTCAGTCGCTAGAGCGCCAAGTTGAGTTCTTGTCAATGAAGCTTGAAGCCGTAAATTCAAGTGTGAACCCAGGTGGCATTGAAATTTTTCCTCCTAAAGATTTTGGTCAACAAGCAGTTGACATGGTAATTGGTTCTCAAGCCCCGCGAGATCAGTTCACCCGGGGTTCGTCACCGGAGTGGTTACACATGCAGGTGGGCGGCGGATTTGAAAGAACAACATGA 858 0.507 MMNEGSFANGNANTASYNLAEIWQFPMNGGAGLGESGGGLALRRPQFGQNLGLFGEFTSGSNPNGPGIDPSCSDQGANGVNRKKRDSEDESVKGVSTTSNGGIGNSNGVNDGDGKRLKVSRNRNESPETKAETETSSEKPAEQSTQPASEPPKPAYIHVRARRGQATDSHSLAERARREKISERMKILQELVPGCNKVIGKALVLDEIINYIQSLERQVEFLSMKLEAVNSSVNPGGIEIFPPKDFGQQAVDMVIGSQAPRDQFTRGSSPEWLHMQVGGGFERTT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4250g00012 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
Pral4250g00012 285 Coils Coil 205 232 - -
Pral4250g00012 285 MobiDBLite consensus disorder prediction 93 107 - -
Pral4250g00012 285 MobiDBLite consensus disorder prediction 53 153 - -
Pral4250g00012 285 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Pral4250g00012 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 232 IPR036638 GO:0046983
Pral4250g00012 285 SMART finulus 171 221 IPR011598 GO:0046983
Pral4250g00012 285 Gene3D - 162 235 IPR036638 GO:0046983
Pral4250g00012 285 FunFam Basic helix-loop-helix transcription factor 162 234 - -
Pral4250g00012 285 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 81 254 IPR024097 GO:0006355
Pral4250g00012 285 CDD bHLH_AtBPE_like 156 236 - -
Pral4250g00012 285 MobiDBLite consensus disorder prediction 53 78 - -
Pral4250g00012 285 MobiDBLite consensus disorder prediction 114 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4250g00012 Pral-Chr4250 100099 102355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4250g00012 1 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 51.737 2.14e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4250g00012 HLH 7.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4250g00012 - - qsa:O6P43_025379 355.525