Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4244g00012 ATGCCAGTTCCACTTGCCCCTTACCCTACACCCCCAGCTCCATATACGCCTCCAGCTAATGGAGGTACACAACAGAGTCAGCTTGTGTGTTGTGGGTGTAGAAACCTTCTGCTCTATCCAGTTGGAGCAACATCTGTGTGCTGTGCTGTTTGCAATGCAGTCACTGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTGGTTTGTGGAGTCTGCCACACTTTACTCATGTACATACGTGGGGCGACAAGCGTGAAATGCTCCTGCTGTCACACTGTCAATCTGGCTCTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGAAACTGTAGAATGCTACTGATGTACCAATATGGAGCAAGATCTGTTAAATGTGCAGTCTGCAATTTTGTAACATCTGTTGGGACCTCGGCAAGCACAGTTGAGCAGAAGTTCAGCGCCTAA 444 0.4932 MPVPLAPYPTPPAPYTPPANGGTQQSQLVCCGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGVCHTLLMYIRGATSVKCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTSASTVEQKFSA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4244g00012 147 PANTHER PROTEIN LSD1 16 57 IPR040319 -
Pral4244g00012 147 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Pral4244g00012 147 NCBIfam zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Pral4244g00012 147 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Pral4244g00012 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Pral4244g00012 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Pral4244g00012 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4244g00012 Pral-Chr4244 166833 169970 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pral4244g00012 zf-LSD1 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4244g00012 - - qsu:112000975 254.218