Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4244g00006 ATGGGCACAGAGATTGGCCTTCTCTCCATGACCCAGATCCAAAAATTGTCACAATCCCAACACAACCATCCCAATCAGCTTCTTCAACCTCATCCTCTCCCAAACCCTAGCTCTTCTTCTTCTTCTTCTTCAACAACCTCCTGGGTCATGTGGAAGCCTAGGGATCCTCAGGAAGAGGATGACTCGTGGGAGGTCAGAGCCTTTGCGCAGGATACCACGAACGTCATGGGCACCACTTGGCCTCCCAGGTCCTACACCTGCACTTTCTGTCGAAGGGAGTTCCGTTCAGCCCAAGCTCTTGGCGGCCACATGAACGTCCACCGCCGTGACCGTGCCCGTCTCCACCACCACCAACCACCACCTGCTGCTGCTTCTGTTCACAGCAACCTGACACCTCATCATCATCATCAAGAGCTTGTTGCAAACAACGGCGGATACTTTCTCTACCATTTGCCAAGCCCCGATGGGATTGGAAACTTCTCTGGTACTAGTAATGCTACTAATACTCTCGCTTCTTCTTTGAATGCATGTAGAGAACCAGTATCACCCACCACACTTCTCTCCGTTATGCCCTACCCACCAAGCAACTTGGTGTCAACTAGCATCCCCTCCTATGATTTTCAAGCCGAGCGGCGGCCTGCAGGATTCGTCAATTCTTCTTGCTGTGATTCTAGCAAACTGGAACAGCCCACGGCATCCTCGTTCGCTGGAAACGGCCATGAGGATCTTGATCTAGAGCTCCGGCTGGGGTACAGACCACCACCTAGCAGAAATCAGAAAACGGTGTGCCTGAGAAAAAGAGAATGA 807 0.5192 MGTEIGLLSMTQIQKLSQSQHNHPNQLLQPHPLPNPSSSSSSSSTTSWVMWKPRDPQEEDDSWEVRAFAQDTTNVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQPPPAAASVHSNLTPHHHHQELVANNGGYFLYHLPSPDGIGNFSGTSNATNTLASSLNACREPVSPTTLLSVMPYPPSNLVSTSIPSYDFQAERRPAGFVNSSCCDSSKLEQPTASSFAGNGHEDLDLELRLGYRPPPSRNQKTVCLRKRE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4244g00006 268 MobiDBLite consensus disorder prediction 15 51 - -
Pral4244g00006 268 PANTHER OS07G0101800 PROTEIN 57 253 - -
Pral4244g00006 268 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Pral4244g00006 268 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Pral4244g00006 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Pral4244g00006 268 MobiDBLite consensus disorder prediction 15 62 - -
Pral4244g00006 268 SMART c2h2final6 85 107 IPR013087 -
Pral4244g00006 268 Pfam C2H2-type zinc finger 85 109 - -
Pral4244g00006 268 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4244g00006 Pral-Chr4244 78050 78856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4244g00006 50 254 C2H2 Transcription Factor Family AT4G17810 39.906 1.98e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4244g00006 zf-C2H2_6 5.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4244g00006 - - jre:108984087 221.861