Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4244g00004 ATGGAATCGATGGAGGAATCCTGGGAAAGCTTGTTCCAGGATTTGGCAATAGCTGGTGATTTCAGTTTTGCTTTTGGGGCTCATGAATTGTTAGGCAGTGCATCACATGAGAACTTTGGAACTAGTTGGAATAATAATAATAATAATACAGATACCTTCAACTCTGAAAATGGCATCATCACGAGCAATCCTTCAAGTTCAAATTCTGTCTTCATGCTACAAGACAAGGCTTCTTTTGATGACCCTTCAAAGGGGTACTTGCAGATTCAAACAAGAATTAAAGAAAGAGGCATGGCGGAGGGTAGAAACACTCGAGAACAAGATCACTTACTTGCCGAGAGAATAAGGAGAGGAAAGATCTCCCAGCACTTCATTGCTCTTTCAGCCCTAATTCCTGGCCTCAAAAGGGCGGATAAGGCTTCTGTGCTGGAGGGAGCTATAAAGCACGTGAAGCAGCTTCAAGAACAAGTGAAAATATTGGAAGAACAGACGAAGAAGAAAACTGGAGAATCCTTGGTGTTTGTTAAGAAGTCTCAGCTGATATCTACGGACATGTCGTTTAATAATTCATCAGACAATATCAAAAACTTCCTTGATCCCTCAGAATCTCATAGAACAGTAGCAGAAGCAGATGTTGAAGCAAGGGTTTCAGACAAGAACGTGTTAATTCGGGTCCAATGCGAGAAACAAGAAGGAATAATGGTGAAGACAATTAAGGAGATAGAAAAATTCCACTTGTCTGTGGTAAATAGCAGCGTGATGCCATTTGGGACTTCCATTCTGGACATCACCATCATAGCTGAGATGGAGGATGAGTTCAACTTGGGCGGGAAAGAGCTCGCTAGAAATCTCAGGATGGCACTCTCACAATCAATGTAA 879 0.4187 MESMEESWESLFQDLAIAGDFSFAFGAHELLGSASHENFGTSWNNNNNNTDTFNSENGIITSNPSSSNSVFMLQDKASFDDPSKGYLQIQTRIKERGMAEGRNTREQDHLLAERIRRGKISQHFIALSALIPGLKRADKASVLEGAIKHVKQLQEQVKILEEQTKKKTGESLVFVKKSQLISTDMSFNNSSDNIKNFLDPSESHRTVAEADVEARVSDKNVLIRVQCEKQEGIMVKTIKEIEKFHLSVVNSSVMPFGTSILDITIIAEMEDEFNLGGKELARNLRMALSQSM 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4244g00004 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 166 IPR036638 GO:0046983
Pral4244g00004 292 SMART finulus 110 159 IPR011598 GO:0046983
Pral4244g00004 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 153 IPR011598 GO:0046983
Pral4244g00004 292 Pfam Helix-loop-helix DNA-binding domain 107 154 IPR011598 GO:0046983
Pral4244g00004 292 Coils Coil 143 170 - -
Pral4244g00004 292 PANTHER BHLH TRANSCRIPTION FACTOR 38 290 - -
Pral4244g00004 292 Gene3D - 101 172 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4244g00004 Pral-Chr4244 48023 49753 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4244g00004 63 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.348 4.79e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4244g00004 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4244g00004 - - pcin:129310385 358.607