Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4244g00002 ATGATCGAGGAGACTGGAGAGGATGCCACCACACTGGAAGGCTTAGATGAAGCCCAAAAGCTAAGCAATGGGGTTGAGGAGGCCACAATCGATGAAGCTGAGAAGCTGAGTAATGGAGTTGAGGAGGCTAGAAGACATGAAGCAGAGGCGAATGATCAGGTCCATCCATCGTCTTCTCCTTATTCCACTGCTCTCTTCCTTCTTTCTAGTGTCTCATCCCGTTTCCAAGTCCACGACGACGAACTTCTTCAGAATCAGATGATGGAAATAACCTCCGCCATGTACTTGCCGGATTTCGGGATGGAGGATACGACAATGCTTGAGCAGTTGCCGGTGGATTATTTTGACGGGCTTGATTTCCAATCGTTGGTCTCCGACAGTTATTCCTCGTACGAGAGTCCCAACTCCGAGAAAACACAGAATCCCCAGTCGATTATTGCCCCACCAGTACCAAGACCAAGCAAGCTGCAGGTGAAGACCAATAAGTCTGATACTGCTTCCAGGCTGATTTCTTTTGGGCACTCCAATATGCACCAATGTTCCAACCAGAGTTCCAATGTTAAGCTCAAAACTATGAATGAAGAAAACGTATTGAATTTTTCGCCTTTGAGCTGCCAAGGATCATACTATGAAGACATAAATGATCAGAAACTGAGGAACACGACGGGCACCGTGACGAGAAATCCACTCCAAGCCCAAGATCACGTCCTGTCCGAACGAAGACGAAGGGAAAAGCTCAACCAGAAGTTCATTGCTCTCTCCTCCATCATTCCGGGCCTCAAGAAGATGGACAAGGCTTCAGTGTTGGGAGATGCTATAGAGTACATAAAACAACTGAAGGAACGCGAAAAGATTCTGGAAGAACAAGTCGCCATGAAAAGAAAGGAATCCGCAGTCTTAAAGAGAAGAACTACTCTCTTCGCCGACAATGATAACTCCCCGTCCGATGAAGTTTCCGGCCAGCCACTTGCAGAAATCGAAGCCAGAGTTCTGGGTAAGAATGTGTTCATCAGAATCCAATGCGAGAAACACGAAGGGTGTGAGGCTAAAATTCTGAGAGAATTAGAAAACCTTCATCTCACTGTTCAAAGCAGTAGCATCTTGCCATTCGGGGACGCCACTCTATGTATAACTATCATAGCTCAGATGGACGATGAGCACAGTATGACAGCAAAGGATTTCGTGGGAAGTCTGAGGAAGGCATTGACATTATTGGATCGTGCATAG 1227 0.4662 MIEETGEDATTLEGLDEAQKLSNGVEEATIDEAEKLSNGVEEARRHEAEANDQVHPSSSPYSTALFLLSSVSSRFQVHDDELLQNQMMEITSAMYLPDFGMEDTTMLEQLPVDYFDGLDFQSLVSDSYSSYESPNSEKTQNPQSIIAPPVPRPSKLQVKTNKSDTASRLISFGHSNMHQCSNQSSNVKLKTMNEENVLNFSPLSCQGSYYEDINDQKLRNTTGTVTRNPLQAQDHVLSERRRREKLNQKFIALSSIIPGLKKMDKASVLGDAIEYIKQLKEREKILEEQVAMKRKESAVLKRRTTLFADNDNSPSDEVSGQPLAEIEARVLGKNVFIRIQCEKHEGCEAKILRELENLHLTVQSSSILPFGDATLCITIIAQMDDEHSMTAKDFVGSLRKALTLLDRA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4244g00002 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Pral4244g00002 408 Coils Coil 269 296 - -
Pral4244g00002 408 Gene3D - 227 291 IPR036638 GO:0046983
Pral4244g00002 408 MobiDBLite consensus disorder prediction 127 161 - -
Pral4244g00002 408 MobiDBLite consensus disorder prediction 127 145 - -
Pral4244g00002 408 Coils Coil 33 53 - -
Pral4244g00002 408 Pfam Helix-loop-helix DNA-binding domain 234 280 IPR011598 GO:0046983
Pral4244g00002 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 304 IPR036638 GO:0046983
Pral4244g00002 408 PANTHER BHLH TRANSCRIPTION FACTOR 106 402 - -
Pral4244g00002 408 SMART finulus 236 285 IPR011598 GO:0046983
Pral4244g00002 408 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4244g00002 Pral-Chr4244 30434 34623 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4244g00002 88 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.207 3.38e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4244g00002 HLH 4.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4244g00002 - - pcin:129311489 421.779