Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4242g00001 CTTATCAATCAAACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGAGACTACTGGGAAAACGTATCAACATGGAAAGTGATGCCCAAGAGACCTTTAACTCATCTTCGTCATCATCATTATCTTCTTCTTCTTCTTCATCATCATCATCAAACTCAGATTCAGGTGCCAAGAGAGATTCAAAAGTTGTTTCAGATCAGGATGGCAATTATTGCTGCAACAACAAGAAGAAGATCGGAAGTGAAGAGAAGGATGATAATAATAATGATAATAACAACAATAAGCATCCATCTTACAGAGGTGTGAGGATGAGGAACTGGGGAAAATGGGTTTCAGAGATTCGTGAGCCCAGAAAGAAATCCAGAATATGGCTTGGAACTTACCCTACTGCAGAAATGGCGGCTCGAGCCCACGACGTCGCGGCTTTAGCCATTAAAGGTCATTCAGCTTACCTCAATTTCCCTCACTTGGCTCTGGAGCTGCCCCGGCCGGCCACCACAGCTCCGAAGGACATCCAAGCCGCGGCTGCAAAGGCGGCTTCTACTGTCTTTGAGGTGGCTACTAATAAGCATTGTCGAGTTGAGGAAGCCCAAGCCGAAGCCGAGCCGGCCTCGTCTTCGACTCAAGAACAGAATTCTTCTTCTCCTCCAATATCGTCTAAGGAAGAAGATGCTTTGTTTGACCTACCAGATCTTTTCACAGATGGCAACAATGGCCTTTGTTCTTATTCTTCTGCTTCTTCTTCTTCTTCCTCTTGGAATTTTTGTGCATCTGATAGTGGTTTCAGGCTTGAGGAGCCATTGCTTTGGGAAAATTACTAG 831 0.4513 LINQTSLSLSLSLSLSLSVRLLGKRINMESDAQETFNSSSSSSLSSSSSSSSSSNSDSGAKRDSKVVSDQDGNYCCNNKKKIGSEEKDDNNNDNNNNKHPSYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPHLALELPRPATTAPKDIQAAAAKAASTVFEVATNKHCRVEEAQAEAEPASSSTQEQNSSSPPISSKEEDALFDLPDLFTDGNNGLCSYSSASSSSSSWNFCASDSGFRLEEPLLWENY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4242g00001 276 Gene3D AP2/ERF domain 101 159 IPR036955 GO:0003700|GO:0006355
Pral4242g00001 276 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Pral4242g00001 276 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Pral4242g00001 276 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Pral4242g00001 276 MobiDBLite consensus disorder prediction 199 224 - -
Pral4242g00001 276 CDD AP2 100 160 IPR001471 GO:0003700|GO:0006355
Pral4242g00001 276 MobiDBLite consensus disorder prediction 33 103 - -
Pral4242g00001 276 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Pral4242g00001 276 MobiDBLite consensus disorder prediction 33 61 - -
Pral4242g00001 276 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Pral4242g00001 276 Pfam AP2 domain 100 151 IPR001471 GO:0003700|GO:0006355
Pral4242g00001 276 MobiDBLite consensus disorder prediction 204 223 - -
Pral4242g00001 276 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 87 241 - -
Pral4242g00001 276 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Pral4242g00001 276 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4242g00001 Pral-Chr4242 5752 6623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4242g00001 94 272 AP2-EREBP Transcription Factor Family AT2G44940 54.327 3.18e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4242g00001 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4242g00001 - - gmx:100801129 241.506