Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4241g00006 ATGATAACGCAAACCGTCATCTTCCTTACCCTTCTTATTCCTTGTTATTGGCTAGTGTTTGGTTTCTCATCAAAACCATATTTTGAAGATATGCAATTTCTTATGTATAGATATTCCTATAATCGCAATCCCCAAGTGATCAGCGATCCCAGTTACGAACTAGTCTGTGAGAAGAACAAGAGCGTGTTATATCTGAACTATGGGAGGCAACTAGTAGAGGCCATTTATGCCACTAACTCTACCACCACTCTCCAATCCATCACTGCTGGAAATGACATCAACAACTACTCCGCTATCACTCGTACATACGACAACTTCACCCACGTTTTCTCATCAGCAAAAGAGATGGAACTGAGAGACAAAAATTATCGTATTTTTGTGGGTGAATTAGTGTTTGTCAGCTGCAAAAATCCAGTTCTCTCTCATCTGTATGAGAATATTGTGGCGCTTTGTTCTACTGAAGAGCCAGAAGCGCAATATTCTTATATGCTGAAGCAGTATCCAAGTCCATCTGATGTGGGAGAGTCCTGCAAAATAGATTTGATGGTGAAAATGGTGCCATGGGGACCGATGACATGTAATGAGAAATGTTCATATCAGAAACATGAGAGTGAAGTGGTAAAGGGGATTCACATCAAATGGCGTGCTGATCGTTGTGGAGTGGCGAACGGAGGGGAACCTAGTTGCTGGTTTGAAAATGCCACTAATATGATTCTCTGTCATCGGGATGCACTAAATCCTGATTTTGCAATGTTCATTGGTGAGCTTCGTGGATTTTTATCTCGACTTCTCTTGGAGGTACTTGGATACAGGTATGTGCCAATCAAGGTACTCATAATTTCCTCAGTTACAGCTATAGCATTTTCCCCTCCTTTTTGTTACATCCCTATTGTTATTGATCCTATGGACTGTGTTGCCTATTGGTTTGCAGCAAAATTTGCTTTGGGATTCCCAATTTTTGTGGGGTTTCTAATATATAATATGAGAAGGAGGCATTTATCTGAGTATGATGACATTGAGGACTTCCTACGAAGTCACAGCAATTTAGTGCCCATCAAATACTCTTACTCTGACATAAGAAGAATGACAAAAAATTTCAAGCATAAGTTAGGAGAAGGGGGTTATGGTTCTGTATATAAAGGAAAGCTTCGAAGCAAGCGTGATGCGGCTGTTAAGCTATTAGGCAAGTCAACAACGGATGGGCATGATTTCATCAATGAAGTTTCCACCATTGGAACTATTCGTCATGTAAATGTGGTGCAACTGATAGGATTTTGTGCAGAGAGAAGAAAGCAAGCTCTTGTTTATGAGTTCATGCCAAACGGATCTTTAGATAAATACATACTTTCTGAGCATGAAAAATCATCAATAAATTATGAGAAGATCAATGAGATTTCTTTAGGGGTGGCTCGTGGGATTGAGTACCTACATCAAGGTTGCGACAAGCAAATCCTACACTTTGATATCAAACCTCACAATATTCTTCTTGATGAGAATTTTTCTCCCAAGATTTCAGACTTTGGATTGGCAAAACTATATCCAACAGATAAAAGTATTGTGTCTCTAACTGCAGCTAGAGGCACAATGGGATACATGGCTCCTGAATTGCTGTATAAAAACATTGGAGGCATCTCACACAAGGCTGATGTTTATAGTTTTGGGATGATGCTGATGGAAATGGCAGGAAGAAGAAAGAACTATGATGTTGTGCAGAATTCGTGGCAGACTTACTTTGCGAAATGGGTTCATGATCAGTTTGAAGAAACAATATTTAAAAGCAATGCCACAGAAGAAGAGAAGAAGATAGCCCAGAAAATGATTACAGTTGCTTTTACTTGCATACAGCTGAGCCCAAGTGATCGCCCCTCAATGAGCAGAGTAGTGGAGATGCTTCAAGGAGATGTTGATGTCTCAGAGATCTTCAGAGCATAG 1932 0.4001 MITQTVIFLTLLIPCYWLVFGFSSKPYFEDMQFLMYRYSYNRNPQVISDPSYELVCEKNKSVLYLNYGRQLVEAIYATNSTTTLQSITAGNDINNYSAITRTYDNFTHVFSSAKEMELRDKNYRIFVGELVFVSCKNPVLSHLYENIVALCSTEEPEAQYSYMLKQYPSPSDVGESCKIDLMVKMVPWGPMTCNEKCSYQKHESEVVKGIHIKWRADRCGVANGGEPSCWFENATNMILCHRDALNPDFAMFIGELRGFLSRLLLEVLGYRYVPIKVLIISSVTAIAFSPPFCYIPIVIDPMDCVAYWFAAKFALGFPIFVGFLIYNMRRRHLSEYDDIEDFLRSHSNLVPIKYSYSDIRRMTKNFKHKLGEGGYGSVYKGKLRSKRDAAVKLLGKSTTDGHDFINEVSTIGTIRHVNVVQLIGFCAERRKQALVYEFMPNGSLDKYILSEHEKSSINYEKINEISLGVARGIEYLHQGCDKQILHFDIKPHNILLDENFSPKISDFGLAKLYPTDKSIVSLTAARGTMGYMAPELLYKNIGGISHKADVYSFGMMLMEMAGRRKNYDVVQNSWQTYFAKWVHDQFEETIFKSNATEEEKKIAQKMITVAFTCIQLSPSDRPSMSRVVEMLQGDVDVSEIFRA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4241g00006 643 Gene3D Phosphorylase Kinase; domain 1 329 438 - -
Pral4241g00006 643 SMART serkin_6 364 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4241g00006 643 PIRSF TyrPK_CSF1-R 409 639 - -
Pral4241g00006 643 PIRSF TyrPK_CSF1-R 24 194 - -
Pral4241g00006 643 FunFam PR5-like receptor kinase 439 641 - -
Pral4241g00006 643 ProSiteProfiles Protein kinase domain profile. 364 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4241g00006 643 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Pral4241g00006 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Pral4241g00006 643 Gene3D Transferase(Phosphotransferase) domain 1 439 639 - -
Pral4241g00006 643 Pfam Protein kinase domain 367 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4241g00006 643 FunFam serine/threonine-protein kinase PBS1-like 334 438 - -
Pral4241g00006 643 PANTHER RUST RESISTANCE KINASE LR10-RELATED 336 635 IPR045874 GO:0004672
Pral4241g00006 643 SUPERFAMILY Protein kinase-like (PK-like) 345 631 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4241g00006 Pral-Chr4241 31147 35104 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4241g00006 353 640 Receptor kinase-like Gene Family AT5G38280 50.842 3.52e-100 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral4241g00006 Pkinase 2.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4241g00006 - - tpra:123914142 550.051