Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4240g00005 ATGATAAGTGAAGCCTCCATAATCATCTTCCTTGCAGCCTTTGCTCTAGTTTCAAATTTTATGGGAGTTTTCCATACCGGATATTTATTTAGTGAATCCTGCGGACAAGTGTTCAACGTCCCAACAGATAGATATCATGATAAAGGCAATTGCAGCGATCCAAGTTACGAACTAGTGTGTGAGAATAACCGAAGTGTGTTGTATGTAAACTATGGGAGGCATTTAATAGAGGCCATTTATGCCACTAACTCCACCACTGCTCTCCAATCCATCACCGCTGGACTTGACATCAACAATTGCCCAGCGATCTCTCGTCAATCCCTCGCATACAATAACTTCAGCCAAGCTTTCACAGCCAAAGAGACAGAACTCGACTCCAAGAATAACCACTTCAATTATTATGTGGGAGGATTAGTGTTTGTCGGCTGCCAAAATCCACTCCCTCCTGATCGCTATCCGGGTTTAGTGGCGCTTTGTACTAACGAAGCGCCCGAAACGCTTCATCCTTTTGTGCTGACGTGGTATTCCTCAAGTATCTCTGGAGTGCCAGAGTCATGCAGAATAGATTTGATAGTGAAGGTGGTGCCATGGGGACCAATGGCGTGTAATGAGAGTTGTTCATATCCGAAAGTTCAGAGGCAAGAGGTAAAAGGGATTGAGGTCAGATGGCGCCCAAATCGTTGTGGAGTGTGGGACGCAGGGCCGCAGCCTGACTGTTGGTTTGAAAATGCCACTAATATGGTTCTTTGTCCTTCCCAAGACTACGGTGCGGCAATTTGTCTTGTGAACCTTATTTTCGTAACTCTCTGGTATGCAGCTAAATTCGTACTGAGTGCCCCTTGTGCTTTAATATTCTTGATTATCCGATGGAGAAGAAGGCATCAATCTTATTATGACAATGTTGAGGACTTCCTCCGAAATAACAGTAACCTGATGCCCATCAAGTACTCTTACTCAGAGATCAAGAAAATGACCAGTGGCTTCAAACACAAGTTGGGTGAAGGAGGCTATGGTTATGTGTATAAAGGTAAGCTTCGAAGCAATCGTGATGTAGCCGTCAAGTTACTGACAAAGTCCAAAGCCAATAATGCACAAGATTTCATTAGTGAAGTTGCCACTATTGGCAGGATTCATCATGTCAATGTGGTGCAGCTGATTGGATTCTGCACTGAAAGAAGTAAGCGAGCTCTTGTTTATGAATTTATGCCTAATGGATCACTTGACAAGTACATATTCTTGGAGAGACAAAGCAACACGCCCCTCAATTACAAGAAAATATTTAACATTTCTCTTGGGATTGCTCGAGGAATTGAGTATTTACATCGAGGATGTGATATGCAAATTCTACACTTTGATATCAAACCTCACAATATCCTTCTTGATGAAAATTTTAATCCAAAGATTTCGGATTTCGGATTAGCTAAGTTGTATCCATTAGATAATAGTATTGTGTCTCTGACAAATGCAAGAGGAACATTTGGATACATGGCTCCTGAATTCTTGTACAAGAACATTGGAGGAATATCACACAAAGCTGATGTTTATAGTTTTGGGATGCTACTGATGGAAATGGCTGGCAGAAGGAAGAACTCAAATGTCATTGAGCATTCCTGGCAGACCTATTTTGCTAAATGGGTTTATGATCAATTTGAGGAATCAATAGAGGGGAGCAATATCTCAGATGAGGAAAGAGGAATTGCAAAGAAGATGATCATAATAGCTTCACATTGCATACAGATGTATCCTAATGATCGACCCTCGATGAAGAATGTGTTAGAGATGCTTGAGGGAGAAATGGAGCTTCAAGAGGCTCTTCCTCCCTAA 1824 0.4183 MISEASIIIFLAAFALVSNFMGVFHTGYLFSESCGQVFNVPTDRYHDKGNCSDPSYELVCENNRSVLYVNYGRHLIEAIYATNSTTALQSITAGLDINNCPAISRQSLAYNNFSQAFTAKETELDSKNNHFNYYVGGLVFVGCQNPLPPDRYPGLVALCTNEAPETLHPFVLTWYSSSISGVPESCRIDLIVKVVPWGPMACNESCSYPKVQRQEVKGIEVRWRPNRCGVWDAGPQPDCWFENATNMVLCPSQDYGAAICLVNLIFVTLWYAAKFVLSAPCALIFLIIRWRRRHQSYYDNVEDFLRNNSNLMPIKYSYSEIKKMTSGFKHKLGEGGYGYVYKGKLRSNRDVAVKLLTKSKANNAQDFISEVATIGRIHHVNVVQLIGFCTERSKRALVYEFMPNGSLDKYIFLERQSNTPLNYKKIFNISLGIARGIEYLHRGCDMQILHFDIKPHNILLDENFNPKISDFGLAKLYPLDNSIVSLTNARGTFGYMAPEFLYKNIGGISHKADVYSFGMLLMEMAGRRKNSNVIEHSWQTYFAKWVYDQFEESIEGSNISDEERGIAKKMIIIASHCIQMYPNDRPSMKNVLEMLEGEMELQEALPP 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4240g00005 607 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Pral4240g00005 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Pral4240g00005 607 FunFam PR5-like receptor kinase 402 605 - -
Pral4240g00005 607 CDD STKc_IRAK 332 597 - -
Pral4240g00005 607 Gene3D Transferase(Phosphotransferase) domain 1 402 604 - -
Pral4240g00005 607 Gene3D Phosphorylase Kinase; domain 1 302 401 - -
Pral4240g00005 607 FunFam serine/threonine-protein kinase PBS1-like 294 401 - -
Pral4240g00005 607 ProSiteProfiles Protein kinase domain profile. 326 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4240g00005 607 SUPERFAMILY Protein kinase-like (PK-like) 307 596 IPR011009 -
Pral4240g00005 607 SMART serkin_6 326 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4240g00005 607 PANTHER RUST RESISTANCE KINASE LR10-RELATED 295 602 IPR045874 GO:0004672
Pral4240g00005 607 Pfam Protein kinase domain 329 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4240g00005 Pral-Chr4240 29144 31353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4240g00005 312 606 Receptor kinase-like Gene Family AT5G38280 53.289 5.93e-103 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral4240g00005 Pkinase 5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4240g00005 - - tpra:123914142 549.666