Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4239g00001 ATGATGAACGAAACCCTCGTAATCGTCTTCGTTGCCGTCTTTGCTCTCCTTATATACTACGGTCCATACGACATTCCATCTCAACTTCCACCCTCCCATATCGTCCAAACATTTACTGAATCCTGCGGACATGTGTTCAACGTCCCAACAAATGGATTCGTTTATTCCTCCAATTGCAGCGATCCCACATACCAACTAGTCTGTGAGAATAGCAGAAGTGTGTTGCATTTAAACTATGGGAGGCACTTAGTAGAAGCCATTTATGCCACTAACTCTACAACTACTCTCCAATCCGTTACCGCTGGACTTGACTTCAACAACTGCTCTGCAATCACTCGTCATTCCCTCTCATACAACAACTTCAGCCAAGCTTTCACAGCCAAAACGACAGAACTAGACTCCAAAAATTACCACTTCAGTTATTATGTGGGAGGATTAGTGTTTGTCAGCTGCCAAAATCCACTCTCTCTTGATCTGAATCCGGATATTGTGGCGCTTTGTGCTAATGAAGCGCTAGAAACAGTTCATTCTTATGTGCTGAAGGGGTATAAATCAAGTGATGTGCCAGAGTCATGCAAAATAGATTTGATGGTGAAGATAGTGCCATGGGGACCAATGACATGTAAGGAGAACTGTTCATATCCACAAGTGCAGAGCCAAGAGGTAAAGGGGATTCACATCAAATGGCACCCAAAACGTTGTGGGGTGTGGGAAGCATCAGGGCAACCTAGCTGCTGGTTTGAAAATGCCACTAATATGGTTCTTTGCCATCACCAGGTTGAGGACATAGCATCTTTTTACTGGGGCTGGTTTGCCGCCTTCGTTTGGAGCGGGATAATTATAGTAACTCTCTGGTCTGGAGCTAAATTTGTACTGGGTGCCCCCTGTGCTTTAATATTCTTGATTCTTCGATGGAAAAGAAGGCATCATTTTTATGACAACGTTGAGGACTTCCTCCGAAATAATAGCAACTTGATGCCCATCAAGTACTCCTACTCAGAGATCAAGAAAATGACCAATGGCTTCAAACACAAGTTGGGTGAAGGAGGCTATGGTTATGTGTACAAAGGTAAGCTTCGAAGCAATCGCGATGTAGCCGTCAAGTTACTGGCAAAGTCCAAAGCCAATAATGCGCAAGATTTCATTAGCGAAGTTGCCACTATTGGCAGGATTCATCATGTCAATGTGGTGCAGCTGATTGGATTCTGTGCTGAAAGAAATAAGCGAGCTCTTGTTTATGAATTTCTGCCTAATGGATCACTTGACAAGTACATATTCTTGGAGAGACAAAGCAACACGCCCATCAATTACGAGAAAATATTTAACATTTCTCTGGGGATTGCTCGAGGAATTGAATATTTACATCGAGGATGTGATATGCAAATTCTACACTTTGATATCAAACCTCACAATATCCTTCTTGATGAAAATTTTAATCCAAAGATTTCGGATTTCGGATTGGCTAAGTTGTACCCATTAGATAATAGTATTGTGTCTCTGACAAATGCAAGAGGAACATTTGGATACATGGCTCCTGAATTCTTGTACAAGAACATTGGAGGAATATCGCACAAAGCTGATGTTTATAGTTTTGGGATGCTACTAATGGAAATGGCTGGCAGAAGGAAGAACTCGAATGTCATTGAGCATTCCTGGCAGACCTATTTTGCTAAATGGGTTTATGATCAATTTGAGGAATCAATAGAGAGGAGCAATATCTCAGATGAGGAAAGAGGAATTGCAAAGAAGATGATTATAATAGCTTCACATTGCATACAGATGTATCCTAATGATCGACCTTCCATGAAGAATGTGTTAGAGATGCTTGAGGGAGAAATGGAGCTTCAAGAGGCTCTTCCTCCCTAA 1866 0.418 MMNETLVIVFVAVFALLIYYGPYDIPSQLPPSHIVQTFTESCGHVFNVPTNGFVYSSNCSDPTYQLVCENSRSVLHLNYGRHLVEAIYATNSTTTLQSVTAGLDFNNCSAITRHSLSYNNFSQAFTAKTTELDSKNYHFSYYVGGLVFVSCQNPLSLDLNPDIVALCANEALETVHSYVLKGYKSSDVPESCKIDLMVKIVPWGPMTCKENCSYPQVQSQEVKGIHIKWHPKRCGVWEASGQPSCWFENATNMVLCHHQVEDIASFYWGWFAAFVWSGIIIVTLWSGAKFVLGAPCALIFLILRWKRRHHFYDNVEDFLRNNSNLMPIKYSYSEIKKMTNGFKHKLGEGGYGYVYKGKLRSNRDVAVKLLAKSKANNAQDFISEVATIGRIHHVNVVQLIGFCAERNKRALVYEFLPNGSLDKYIFLERQSNTPINYEKIFNISLGIARGIEYLHRGCDMQILHFDIKPHNILLDENFNPKISDFGLAKLYPLDNSIVSLTNARGTFGYMAPEFLYKNIGGISHKADVYSFGMLLMEMAGRRKNSNVIEHSWQTYFAKWVYDQFEESIERSNISDEERGIAKKMIIIASHCIQMYPNDRPSMKNVLEMLEGEMELQEALPP 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4239g00001 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Pral4239g00001 621 SUPERFAMILY Protein kinase-like (PK-like) 321 610 IPR011009 -
Pral4239g00001 621 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Pral4239g00001 621 PANTHER RUST RESISTANCE KINASE LR10-RELATED 309 616 IPR045874 GO:0004672
Pral4239g00001 621 FunFam PR5-like receptor kinase 416 619 - -
Pral4239g00001 621 FunFam serine/threonine-protein kinase PBS1-like 311 415 - -
Pral4239g00001 621 Pfam Protein kinase domain 343 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4239g00001 621 Gene3D Transferase(Phosphotransferase) domain 1 416 618 - -
Pral4239g00001 621 Gene3D Phosphorylase Kinase; domain 1 316 415 - -
Pral4239g00001 621 ProSiteProfiles Protein kinase domain profile. 340 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4239g00001 621 SMART serkin_6 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4239g00001 Pral-Chr4239 26727 30154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4239g00001 289 620 Receptor kinase-like Gene Family AT5G38280 49.565 1.22e-104 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral4239g00001 Pkinase 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4239g00001 - - tpra:123914142 530.791