Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4230g00004 ATGGCTCTCATCACTTTCCAACTTGTTCAACATGCATTCCCTTTCTACTTCGTCTCCCTCTCACTTCTCTTCTCCATTTTTCTGCTCACTCCTTCCTCTTGCTTCGCCCCCAGAAAGTTCCTTAATTCATCTCTTTCTTACTCCCCTTCTGGTTCTGATTGGTCTCCGGCCGAGGCCACTTGGTACGGTAGCCCCACCGGCGCCGGAAGTGATGGGGGTGCATGCGGATATGGTGGTGCTGTGGACCAAGCTCCATTTTCGTCGATGATATCGGCGGGAGGGCCTCCTCTGTATGAATCAGGAAAAGGCTGCGGAGCTTGCTATGAGGTGAAGTGCACTGGGAATCCCGCCTGCTCCGGCAACCCGGTGGAGGTGGTGATCACCGACGAGTGCCCCGGCTGTGGCGGAGCCGACAAAGTTCACTTCGATTTGAGCGGCACGGCCTTCGGCGCTATGGCTGTTTCAGGTCAGGCTCAGAAGCTACGAGATGCTGGCATTTTGCAGATTCAACACAGAAGGGTTAAATGCAACTATCGTGGCACGTCACTAGCGTTCCACGTGGACTCAGGCTCCAACGCCAACTACTTCGCATGTTTGGTAGAGTACGAGGACGGAGACGGAGACCTGGCCAAGGTGGAACTGAAGGAGGCACTGGATTCTGCCACGTGGACGCCCATGCAACAGTCTTGGGGCGCCGTCTGGAAGCTCAACGCCGGCGCGCCCCTCAAAGCCCCCTTCTCCCTCCGTCTGACCACCGTCGAGTCCGGTCGCACTCTGGTGGCCGATCATGTCATCCCCGCCGGTTGGACCCCCGGCCAGACTTACCGTCACCGGTCAATTTCCAGGCCTAGCTATACATAG 861 0.5714 MALITFQLVQHAFPFYFVSLSLLFSIFLLTPSSCFAPRKFLNSSLSYSPSGSDWSPAEATWYGSPTGAGSDGGACGYGGAVDQAPFSSMISAGGPPLYESGKGCGACYEVKCTGNPACSGNPVEVVITDECPGCGGADKVHFDLSGTAFGAMAVSGQAQKLRDAGILQIQHRRVKCNYRGTSLAFHVDSGSNANYFACLVEYEDGDGDLAKVELKEALDSATWTPMQQSWGAVWKLNAGAPLKAPFSLRLTTVESGRTLVADHVIPAGWTPGQTYRHRSISRPSYT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4230g00004 286 PANTHER EXPANSIN-B3 29 277 - -
Pral4230g00004 286 Pfam Expansin C-terminal domain 184 266 IPR007117 -
Pral4230g00004 286 SUPERFAMILY Barwin-like endoglucanases 43 180 IPR036908 -
Pral4230g00004 286 CDD DPBB_EXPB_N 54 176 - -
Pral4230g00004 286 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 181 IPR007112 -
Pral4230g00004 286 Gene3D - 177 277 IPR036749 -
Pral4230g00004 286 PRINTS Expansin/Lol pI family signature 164 180 IPR007118 GO:0005576
Pral4230g00004 286 PRINTS Expansin/Lol pI family signature 53 68 IPR007118 GO:0005576
Pral4230g00004 286 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Pral4230g00004 286 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Pral4230g00004 286 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Pral4230g00004 286 PRINTS Expansin/Lol pI family signature 263 277 IPR007118 GO:0005576
Pral4230g00004 286 Gene3D - 39 176 IPR036908 -
Pral4230g00004 286 SUPERFAMILY PHL pollen allergen 182 276 IPR036749 -
Pral4230g00004 286 SMART dpbb_1 90 171 IPR007112 -
Pral4230g00004 286 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 194 277 IPR007117 -
Pral4230g00004 286 Pfam Lytic transglycolase 91 170 IPR009009 -
Pral4230g00004 286 PRINTS Major pollen allergen Lol pI signature 232 249 IPR005795 GO:0005576|GO:0019953
Pral4230g00004 286 PRINTS Major pollen allergen Lol pI signature 112 122 IPR005795 GO:0005576|GO:0019953
Pral4230g00004 286 PRINTS Major pollen allergen Lol pI signature 201 216 IPR005795 GO:0005576|GO:0019953
Pral4230g00004 286 PRINTS Major pollen allergen Lol pI signature 92 103 IPR005795 GO:0005576|GO:0019953
Pral4230g00004 286 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576|GO:0019953
Pral4230g00004 286 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4230g00004 Pral-Chr4230 67118 68868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4230g00004 34 276 Expansin Gene Family AT1G65680 63.786 1.42e-114 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4230g00004 - - pcin:129295689 471.855