Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4230g00002 | ATGTTCATGGAGAAGCGCGAGTGCAAGCTTTGCTCCAAAACCTTCGCTAATGGCAGAGCTCTGGGAGGTCACATGAGGTCTCACATGAAGAAGCTTTCGCTACCTTCCAAGCCACAGGAATCCCGATCGCCTTCTCCCACTTTACTGAGTTTCGCGGCCGACTCGCCTTCTTCTTCTTCTTCATCTGAAGATGAAGGAGACAACGGTCTGAGTTATGTCTTCAGAGGGAAACCGAAGAGGAGCATTCGCATCGTAGATCCTGAGTTTTCGTTTGTTGTGGATCCTAACGGCTCTGTGATTCAAGACAGAGAGAGCGAGACGGAGACCGAGTCATCCAAGAAGCCAAGTCGGAAACGATCCAAACGAGCTTGGAAACTCGGTAGTTCCGATGATGATGACGATGATGATGATCACTACTGTCACAAGAAAATTCAGCAACAAGAAACAGTGGGAAAAGTCAAATCGAACGAACTGTGTAAGACCGAGTCGTGGATTCCGGAGCCTGAACCGGCGAGTTCGATCTCCGATACGACCACCGAAGAAGACGTCGCGTACTGCCTTATGATGCTTTCTAGGGACAAATGGAAGAGACAAAAGGATCTGAAAGACCAATACGACATCGCGGAGGAAGACGAGGACAAGGACGAAGACGAAGACGCGGAAGAAAACGAAGGCGATGAATCCGAGGGGGCTTTGAAAGCGTTGAAATCCAGAACTCGCGGTAAGTACACGTGCGAGACGTGCAAGAAGGTGTTTCGATCTTATCAAGCACTTGGTGGTCACAGAGCGAGTCACAAGAAGATCAAAGTGGAGCCCGAGAATCATAACAATAATGAAGGCACTTCATCTTCTTCAATGTTGGATAAGAAAATTCACGAATGCCCTATCTGTTTCAGAGTTTTCTCTTCAGGTCAAGCTCTTGGGGGACACAAGAGGACCCATCTTACTGGGTCGTCGTCGACATTACCGACTCAAACTTCCACTAAGCCGGTCGAAAATTTCATAGATCTTAACCTTCCTGCTCCGACGGACGAAGACGACATCAGCCAAATCGACAATTCTGGAGTTTCAGATGCTGAATTCGTCATTGATCGCATCAGACAGTGA | 1107 | 0.4815 | MFMEKRECKLCSKTFANGRALGGHMRSHMKKLSLPSKPQESRSPSPTLLSFAADSPSSSSSSEDEGDNGLSYVFRGKPKRSIRIVDPEFSFVVDPNGSVIQDRESETETESSKKPSRKRSKRAWKLGSSDDDDDDDDHYCHKKIQQQETVGKVKSNELCKTESWIPEPEPASSISDTTTEEDVAYCLMMLSRDKWKRQKDLKDQYDIAEEDEDKDEDEDAEENEGDESEGALKALKSRTRGKYTCETCKKVFRSYQALGGHRASHKKIKVEPENHNNNEGTSSSSMLDKKIHECPICFRVFSSGQALGGHKRTHLTGSSSTLPTQTSTKPVENFIDLNLPAPTDEDDISQIDNSGVSDAEFVIDRIRQ | 368 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4230g00002 | 368 | Gene3D | Classic Zinc Finger | 240 | 314 | - | - | |
| Pral4230g00002 | 368 | MobiDBLite | consensus disorder prediction | 197 | 235 | - | - | |
| Pral4230g00002 | 368 | Coils | Coil | 198 | 218 | - | - | |
| Pral4230g00002 | 368 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 33 | IPR013087 | - | |
| Pral4230g00002 | 368 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 292 | 314 | IPR013087 | - | |
| Pral4230g00002 | 368 | MobiDBLite | consensus disorder prediction | 101 | 115 | - | - | |
| Pral4230g00002 | 368 | SUPERFAMILY | beta-beta-alpha zinc fingers | 7 | 31 | IPR036236 | - | |
| Pral4230g00002 | 368 | MobiDBLite | consensus disorder prediction | 93 | 138 | - | - | |
| Pral4230g00002 | 368 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
| Pral4230g00002 | 368 | MobiDBLite | consensus disorder prediction | 123 | 138 | - | - | |
| Pral4230g00002 | 368 | Pfam | C2H2-type zinc finger | 243 | 267 | - | - | |
| Pral4230g00002 | 368 | Pfam | C2H2-type zinc finger | 7 | 31 | - | - | |
| Pral4230g00002 | 368 | Pfam | C2H2-type zinc finger | 292 | 315 | - | - | |
| Pral4230g00002 | 368 | MobiDBLite | consensus disorder prediction | 22 | 77 | - | - | |
| Pral4230g00002 | 368 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 245 | 265 | IPR013087 | - | |
| Pral4230g00002 | 368 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 243 | 270 | IPR013087 | - | |
| Pral4230g00002 | 368 | MobiDBLite | consensus disorder prediction | 34 | 67 | - | - | |
| Pral4230g00002 | 368 | MobiDBLite | consensus disorder prediction | 206 | 226 | - | - | |
| Pral4230g00002 | 368 | SUPERFAMILY | beta-beta-alpha zinc fingers | 243 | 314 | IPR036236 | - | |
| Pral4230g00002 | 368 | MobiDBLite | consensus disorder prediction | 262 | 285 | - | - | |
| Pral4230g00002 | 368 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
| Pral4230g00002 | 368 | SMART | c2h2final6 | 243 | 265 | IPR013087 | - | |
| Pral4230g00002 | 368 | SMART | c2h2final6 | 292 | 314 | IPR013087 | - | |
| Pral4230g00002 | 368 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 294 | 314 | IPR013087 | - | |
| Pral4230g00002 | 368 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 3 | 362 | IPR044303 | GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral4230g00002 | Pral-Chr4230 | 35537 | 60110 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral4230g00002 | 3 | 351 | C2H2 Transcription Factor Family | AT3G60580 | 40.000 | 4.50e-65 | 206 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Pral4230g00002 | zf-C2H2_6 | 3.8e-10 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4230g00002 | - | - | pcin:129291551 | 546.584 |