Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4227g00017 ATGAATCGCAGGGTGAGGAGGAAGGTCGCAAGAAAAGGCAAAGAAAAGGTGGTCTTGCCAAGTTATCCTGAAATTCGAGATGAGGTTTCGGATTCATACCCTGAACGGCTTGTTGATTGGAGGGGCTTGCCTGATGATACAGTAATTCAACTGTTTTCATGTCTTAGTTATCGTGACCGAGCAAGCTTATCATCAACTTGTAGGACATGGAGGCTTCTTGCTAGCTCTCCATGTTTATGGACTTCTCTTGATCTTCGCTCTCACAGGTTTGATGCCACAATGGCATCTTCACTTTCTCCAAGGTGTGTACATCTTCACAAGCTTAGATTTCGTGGGGCTGAATCTGCTGATGCGATAATTCATCTTCAAGCTAGGAATTTGCGTGAAATAAGTGGTGACTACTGCAGGAAGATTACTGATGCGACCCTTGCAGTAATTGTGGCCCGGCATGAGTTGCTTGAGAGCCTTCAGCTTGGTCCAGATTTCTGTGAAAGAATCAGCAGTGATGCTATAAAAGCAATTGCTCATTGCTGTCCTAGGTTAAGGAAAATTAGACTCTCAGGCATTAGGGATGTAAGTTCAGATGCCATTAATGCATTGGCTAAGCATTGTCCAAATTTGACCGATGTTGGATTCATTGACTGTCTGAAGGTTGACGAGCTAGCATTGGGAAACGTGTTATCAGTTCGATTCCTCTCTGTTGCAGGGACGTCAAGTATGAATTGGGGTGTAGTTTCTCATCTTTGGCATAAGCTGCCTAATCTTACTGGAGTAGATGTTTCAAGAACTGATATTGGTCCATCTACTGTTTCGAGATTGTTGTCATCCCAGAGCTTGAGAGTTTTGTGTGCTCTGAATTGTCCTATACTTGAAGAAGACACCAGCTTCTCCACAAATAAATACAAAAATAAGCTATTAATTGCCCTTTTTAATGATATTTTTAAAGGACTGGCTTCTTTATTTTTTGATGATACAAAGAATGGCAAGAATGTGTTTTTGGACTGGAGGAGCGTTAAGAACAATAACAAAGACTTGAATGAAATTATGATCTGGCTTGAGTGGATCCTATCCCATACACTTCTGCGATCTGCTGAGAGCTCTCAACAGGGCCTGGAAAATTTCTGGGTTGAACAAGGTGGAGCACTCCTGCTTAGTCTAATGCAGAGTCCACAAGAGGATGTTCAGGAAAGGGCAGCCACAGGCCTTGCAACCTTTGTTGTAATTGATGATGAAAATGCTAGCATTGACTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGTGGCATACGGCTACTTCTTGGCCTGGCAAAATCATGGAGAGAAGGGCTTCAGTCTGAGGCAGCTAAGGCCATTGCAAATTTGTCTGTCAATGCCAATGTTGCAAAAGCTGTTGCAGAAGAAGGGGGAATTGATATTCTTGCTGGTTTGGCGAGATCCATGAACAAGCTGGTGGCTGAAGAGGCTGCTGGAGGATTGTGGAACCTCTCTGTTGGAGAAGAACACAAGGGTGCAATTGCTGCAGCAGGTGGAATACAAGCTTTAGTGGATCTTATATTCAAGTGGTCCTCCAGCGGGGATGGAGTTTTGGAACGCGCAGCTGGTGCATTAGCTAATCTGGCAGCTGATGATAAGTGTAGTACAGAAGTTGCGCTGGCTGGCGGTGTACATGCTTTAGTGATGCTTGCACGTAGCTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAATTTGGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTTGGACAAGAAGCAGGGGCTCTGGAAGCACTTGTTCAACTTACACGCTCTCCTCACGAGGGTGTCAGGCAAGAAGCTGCTGGTGCGCTTTGGAATTTGTCATTTGATGACAGGAATCGAGAAGCCATTGCAGCAGCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCACAATCTTGTTCTAACGCCTCCCCAGGACTTCAAGAGAGAGCCGCTGGTGCTCTCTGGGGATTGTCAGTTTCTGAAGCTAATAGCATTGCTATTGGACGTGAAGGAGGTGTCGCACCCTTGATTGCACTGGCGCGATCTGAAGCTGAGGATGTCCATGAAACTGCTGCAGGAGCACTATGGAATCTTGCTTTTAACCCTGGTAATGCTCTACGTATTGTTGAGGAAGGAGGAGTCTCTGCTCTTGTTGATCTATGTTCTTCATCATTATCAAAGATGGCACGTTTCATGGCTGCATTGGCATTGGCTTACATGTTTGATGGGAGAATGGATGAATTTGCTTTGGTAGGAACCTCGTCAGAAGGCATCTCCAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTCATCCTTATGTTTTCTGATCCTCAAGCATTTGCTGCTGCTGCTACATCATCTGCCCCTGCCGCATTGGCTCAAGTTTCTGAAGGCGCACGAATCCAAGAAGCAGGACATCTTAGATGCAGTGGTTCTGAAATTGGAAGATTTGTTGCTATGCTACGAAATCCATCATCTATTCTAAAAGCTTGTGCTGCATTTGCTCTTCTACAGTTTACAATTCCTGGTGGACGACATGCCATGCACCATGCCAGCCTCATGCAGAACGCATGTGCAGCAAGAGTTCTTCGTGGGGCAGCTGCCTCGGCAACTGCGCCATTGGAAGCAAAGATATTTGCCAGAATTGTTCTCCGCAACCTTGAGTATCATCAGACAGATCTCCAAACCATCTAG 2757 0.4574 MNRRVRRKVARKGKEKVVLPSYPEIRDEVSDSYPERLVDWRGLPDDTVIQLFSCLSYRDRASLSSTCRTWRLLASSPCLWTSLDLRSHRFDATMASSLSPRCVHLHKLRFRGAESADAIIHLQARNLREISGDYCRKITDATLAVIVARHELLESLQLGPDFCERISSDAIKAIAHCCPRLRKIRLSGIRDVSSDAINALAKHCPNLTDVGFIDCLKVDELALGNVLSVRFLSVAGTSSMNWGVVSHLWHKLPNLTGVDVSRTDIGPSTVSRLLSSQSLRVLCALNCPILEEDTSFSTNKYKNKLLIALFNDIFKGLASLFFDDTKNGKNVFLDWRSVKNNNKDLNEIMIWLEWILSHTLLRSAESSQQGLENFWVEQGGALLLSLMQSPQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIDILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAAAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSLSKMARFMAALALAYMFDGRMDEFALVGTSSEGISKSVSLDGARRMALKHIEAFILMFSDPQAFAAAATSSAPAALAQVSEGARIQEAGHLRCSGSEIGRFVAMLRNPSSILKACAAFALLQFTIPGGRHAMHHASLMQNACAARVLRGAAASATAPLEAKIFARIVLRNLEYHQTDLQTI 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4227g00017 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 584 IPR000225 GO:0005515
Pral4227g00017 918 Gene3D - 520 587 IPR011989 -
Pral4227g00017 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Pral4227g00017 918 Pfam Armadillo/beta-catenin-like repeat 675 712 IPR000225 GO:0005515
Pral4227g00017 918 Pfam Armadillo/beta-catenin-like repeat 421 455 IPR000225 GO:0005515
Pral4227g00017 918 Pfam Armadillo/beta-catenin-like repeat 499 541 IPR000225 GO:0005515
Pral4227g00017 918 Pfam Armadillo/beta-catenin-like repeat 552 583 IPR000225 GO:0005515
Pral4227g00017 918 Pfam Armadillo/beta-catenin-like repeat 629 671 IPR000225 GO:0005515
Pral4227g00017 918 Pfam Armadillo/beta-catenin-like repeat 462 496 IPR000225 GO:0005515
Pral4227g00017 918 Pfam Armadillo/beta-catenin-like repeat 591 627 IPR000225 GO:0005515
Pral4227g00017 918 SMART fbox_2 43 83 IPR001810 GO:0005515
Pral4227g00017 918 SUPERFAMILY RNI-like 38 292 - -
Pral4227g00017 918 SMART LRR_CC_2 204 229 IPR006553 -
Pral4227g00017 918 SMART LRR_CC_2 252 276 IPR006553 -
Pral4227g00017 918 SMART LRR_CC_2 124 149 IPR006553 -
Pral4227g00017 918 SMART LRR_CC_2 178 203 IPR006553 -
Pral4227g00017 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 599 641 IPR000225 GO:0005515
Pral4227g00017 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 684 726 IPR000225 GO:0005515
Pral4227g00017 918 SMART arm_5 588 628 IPR000225 GO:0005515
Pral4227g00017 918 SMART arm_5 416 456 IPR000225 GO:0005515
Pral4227g00017 918 SMART arm_5 542 583 IPR000225 GO:0005515
Pral4227g00017 918 SMART arm_5 457 497 IPR000225 GO:0005515
Pral4227g00017 918 SMART arm_5 629 672 IPR000225 GO:0005515
Pral4227g00017 918 SMART arm_5 714 755 IPR000225 GO:0005515
Pral4227g00017 918 SMART arm_5 498 541 IPR000225 GO:0005515
Pral4227g00017 918 SMART arm_5 673 713 IPR000225 GO:0005515
Pral4227g00017 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 509 554 IPR000225 GO:0005515
Pral4227g00017 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 640 685 IPR000225 GO:0005515
Pral4227g00017 918 Pfam F-box-like 41 86 IPR001810 GO:0005515
Pral4227g00017 918 Gene3D Ribonuclease Inhibitor 34 316 IPR032675 -
Pral4227g00017 918 Gene3D - 381 518 IPR011989 -
Pral4227g00017 918 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Pral4227g00017 918 Gene3D - 588 678 IPR011989 -
Pral4227g00017 918 Gene3D - 679 758 IPR011989 -
Pral4227g00017 918 FunFam Protein ARABIDILLO 2 354 501 - -
Pral4227g00017 918 PANTHER PROTEIN ARABIDILLO 1 1 915 - -
Pral4227g00017 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 510 IPR000225 GO:0005515
Pral4227g00017 918 SUPERFAMILY ARM repeat 381 743 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4227g00017 555 757 U-box Gene Family AT2G23140 35.294 4.35e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4227g00017 - - gmx:100819086 1520.75