Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4227g00008 ATGCAAGTGAAGAAGAAGGATCAAGGGCCTATAAGGAAAGGGCCATGGAAAGCCGAGGAAGACGAAGTGCTTCTAAGCCATGTCAACAAGTATGGCCCCAGAGACTGGAGCTCCATTCGATCCAAGGGCCTTCTTCAACGCACCGGCAAGTCTTGTCGTCTTCGTTGGGTCAATAAGCTTCGTCCAAACCTCAAGAGTGGATGCAAATTTTCGCTGGAGGAGGAGAGGGTGGTGATTGAGTTGCAAGCACAATTTGGGAACAGATGGGCCAAGATTGCGTCTTATTTGCCAGGAAGAACAGATAATGATGTCAAGAATTTCTGGAGTAGTAGGCGAAAGAGGATCGCTAGGATTCTGCATTCTTCACCGCCATCATCTAAATCCTACAAGAACAAAAATGAAGTCCCCAGTTTCCACAATGTTTCCCCTCTGGAGGCTCGTAAGTTCAGTTCTTCATCTGTGGAAGAATCATCATCAAAAGCTCATCAGCCACGCTCATCATCCTTTACTACTGAGAATTCAGAGGTCATAAAGATGGTGCCATTGCAAGATCTCATGAACTCCACCAATCCCTCGAGTTCTGACACAGTCAATTCGATCAAAGAAGAGTTTGCGACATCGTTTGAGAGCTACATGAGCACTGACATAAGCTCAGGAATTGGTTTCCCGCAGATTTTTCCATTCTCAATGGAAAGTCAAGATCTTTTCTTGGCCAGATCTAATGAGTCTGCTGGTTTCATTGATGAATTGGGATTAGTAGGGGACCCTATGGATGATGATGCCTCAGAACTTGGAATAGGAACACAGATTCCATTTTTAGGGTTTCCTTTCTATGATCCATCAGGAAGTTGTAGAATTGGGACGAGGGGTCCAAATGGGAACAACCCCACAAACCCTGAATGCTTCTTTGATGATTTTCCAGATGATATGTTTGATCATCCTCAGCTACCTCCAAGCCCATCATCATCAGAGCTGTGA 978 0.4509 MQVKKKDQGPIRKGPWKAEEDEVLLSHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKSGCKFSLEEERVVIELQAQFGNRWAKIASYLPGRTDNDVKNFWSSRRKRIARILHSSPPSSKSYKNKNEVPSFHNVSPLEARKFSSSSVEESSSKAHQPRSSSFTTENSEVIKMVPLQDLMNSTNPSSSDTVNSIKEEFATSFESYMSTDISSGIGFPQIFPFSMESQDLFLARSNESAGFIDELGLVGDPMDDDASELGIGTQIPFLGFPFYDPSGSCRIGTRGPNGNNPTNPECFFDDFPDDMFDHPQLPPSPSSSEL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4227g00008 325 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pral4227g00008 325 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Pral4227g00008 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 116 IPR017930 -
Pral4227g00008 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 56 IPR017930 -
Pral4227g00008 325 Gene3D - 68 137 - -
Pral4227g00008 325 MobiDBLite consensus disorder prediction 289 325 - -
Pral4227g00008 325 FunFam Transcription factor GAMYB 68 137 - -
Pral4227g00008 325 Gene3D - 13 65 - -
Pral4227g00008 325 CDD SANT 69 108 IPR001005 -
Pral4227g00008 325 CDD SANT 15 60 IPR001005 -
Pral4227g00008 325 SMART sant 12 62 IPR001005 -
Pral4227g00008 325 SMART sant 66 114 IPR001005 -
Pral4227g00008 325 Pfam Myb-like DNA-binding domain 16 74 - -
Pral4227g00008 325 MobiDBLite consensus disorder prediction 152 173 - -
Pral4227g00008 325 PANTHER TRANSCRIPTION FACTOR DUO1 4 322 - -
Pral4227g00008 325 FunFam MYB transcription factor 13 65 - -
Pral4227g00008 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4227g00008 Pral-Chr4227 76597 78552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4227g00008 1 320 MYB Transcription Factor Family AT3G60460 46.505 1.37e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4227g00008 Myb_DNA-bind_6 8.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4227g00008 K09422 - gmx:100805384 325.865