Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4226g00004 ATGGAAAGCCACAGTAGCAGTACCGAATACCGGTGGAAAGCTGAAGACGCCATTGCTGGCAACGCGAAAGCTCTTCAAGCTCTGAGAGAGCTCATCATATTCCCGCTTCTCTACTCCCACCAAGCCAAGAAGCTCGTGGCCACAAGGTTTGCTGCTGTACGGTCCTCCAGGCACTGGAAAGTTCGAGTCATGCGACGCAATGTCCTGTTTGGTTTGCTTTCTGTTCAGTATGGCTTCATGGGTTACCCAGTGGGAGAATTATCATTTTGTTTCGCTAATTCAATTTCATATTTAATATTTGATGTCTCATTGCTATTGCAGACAAGTCTAGTACGAGCCGTTGTTCAGGAATGTGGAGCACATTTGACAATCATCAGTCCTCATTCTGTCCATAAAGCACATACTGGGGAAAGCGAGAGAATTCTCCGCGAGGCCTTTGCACAGGCATCATCTCATTCAACTTGTGGCAAGCCATCAGTTATCTTTATAGATGAAATAGATGTACTTTGTCCTCGGCGAGATTCAAAGAGGGAGCAAGATGTTCGGATTGCTTCCCAGCTTTTTACATTGATGGATTCAAATAAACCATCCTCATCCACACCAAGAGTTGTTGTCGTTGCATCAACTAACAGGGTGAATGCAATTGATCCAGCCCTTAGAAGGTATGGACGCTTTGATGCTGAAATTGAAGTTACTGCCCCAAATGAAGAGGAGCGTTTTCAAATTCTTAAGCTTTACACAAGGAAGATTCCCTTGGATCCCAGCGTTGACCTAAAAATGATAGCTGCATCTTGCAATGGATATGTTGGGGCTGATTTGGAAGCCTTGTGCCGTGAGGCTACTACATTAGCAGCTAAAAGGTCCGGAGATGCAAATGGAAATGCTGGTCACTTAAGCATAATGATGGAAGATTGGAACAATGCGAGATCTGTTGTTGGTCCAAGCATAACAAGAGGTGTTACAGTGGAAATTCCTAAAGTGACTTGGGATGATATTGGCGGATTAAAAGAATTAAAGAAAAAGCTTCAGCAAGCTGTTGAATGGCCTATCAAGCATTCTGAAGTATTTTCTAGATTGGGCATTTCCCCAGTGCGAGGGATTCTCTTGCATGGGCCTCCAGGATGTTCCAAAACAACCCTTGCCAAAGCTGCTGCACATGCAGCCCAAGCTTCTTTCTTTTCCTTGAGTGGTGCAGAAATGTATTCGATGTATGTAGGAGAGGGGGAAGCATTGCTTCGGAATACATTTCATAGGGCACGGCTTGCAGCACCCAGCATAATATTTTTTGATGAGGCTGATGTGGTAGCCGCAAAACGGGGTGATTCTTCAAGCAATAGCAGTACGGTTGGAGAGAGGCTTTTATCCACCCTCCTGACTGAAATGGATGGTTTAGAAGAAGCTACAGGAATCCTTGTATTGGCAGCCACAAATCGCCCTTATGCAATAGACGCTGCACTAATGCGCCCGGGACGTTTTGACCTGGTGCTGTATGTGCCCCCACCTGATTTGGAAGCTCGATATGAAATACTCTGTGTACATACACGTGGCATGAAGCTAGGGAATGATGTCAATCTCTGTAGACTAGCAGAAGATACGGAGCTATTCACAGGTGCCGAACTTGAGGGTTTATGCAGAGAAGCCGGAATCGTTGCTCTAAGAGAAGACATATCAGCTACTGTTGTGTGTGACCGCCATTTTCAGGTTGTGAGAAATTCTGTGAATCCAGCATTAACAAAAGAAGAAATTGATTCCTATTCATCTTTCATGAAGACCTCGTCTTCTGCATTTTCTAGGCATGTAGAATCAAGTTCAAAACATGATAGAAAGAAAAGTAGTAACATTTTAGGCTCCATGGTTAAACTTGGTATTGTCAGCTGTATGCTACTTGTTGCTGCTAAATACTTTTTCGTGCATGAAGAACAATCTGTAAATGAAGTGGCTGTCACATGA 1950 0.441 MESHSSSTEYRWKAEDAIAGNAKALQALRELIIFPLLYSHQAKKLVATRFAAVRSSRHWKVRVMRRNVLFGLLSVQYGFMGYPVGELSFCFANSISYLIFDVSLLLQTSLVRAVVQECGAHLTIISPHSVHKAHTGESERILREAFAQASSHSTCGKPSVIFIDEIDVLCPRRDSKREQDVRIASQLFTLMDSNKPSSSTPRVVVVASTNRVNAIDPALRRYGRFDAEIEVTAPNEEERFQILKLYTRKIPLDPSVDLKMIAASCNGYVGADLEALCREATTLAAKRSGDANGNAGHLSIMMEDWNNARSVVGPSITRGVTVEIPKVTWDDIGGLKELKKKLQQAVEWPIKHSEVFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAEMYSMYVGEGEALLRNTFHRARLAAPSIIFFDEADVVAAKRGDSSSNSSTVGERLLSTLLTEMDGLEEATGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILCVHTRGMKLGNDVNLCRLAEDTELFTGAELEGLCREAGIVALREDISATVVCDRHFQVVRNSVNPALTKEEIDSYSSFMKTSSSAFSRHVESSSKHDRKKSSNILGSMVKLGIVSCMLLVAAKYFFVHEEQSVNEVAVT 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4226g00004 649 CDD RecA-like_CDC48_r2-like 338 498 - -
Pral4226g00004 649 Gene3D - 7 232 IPR027417 -
Pral4226g00004 649 Pfam ATPase family associated with various cellular activities (AAA) 108 231 IPR003959 GO:0005524|GO:0016887
Pral4226g00004 649 Pfam ATPase family associated with various cellular activities (AAA) 367 499 IPR003959 GO:0005524|GO:0016887
Pral4226g00004 649 FunFam spermatogenesis-associated protein 5-like protein 1 501 587 - -
Pral4226g00004 649 PANTHER AAA-FAMILY ATPASE 15 592 - -
Pral4226g00004 649 SMART AAA_5 100 235 IPR003593 GO:0016887
Pral4226g00004 649 SMART AAA_5 363 502 IPR003593 GO:0016887
Pral4226g00004 649 ProSitePatterns AAA-protein family signature. 470 488 IPR003960 GO:0005524|GO:0016887
Pral4226g00004 649 FunFam Cell division control protein 48-B-like protein 317 501 - -
Pral4226g00004 649 Pfam AAA+ lid domain 255 292 IPR041569 -
Pral4226g00004 649 Pfam AAA+ lid domain 522 567 IPR041569 -
Pral4226g00004 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 587 IPR027417 -
Pral4226g00004 649 Gene3D - 317 501 IPR027417 -
Pral4226g00004 649 Gene3D - 502 593 - -
Pral4226g00004 649 Gene3D - 234 316 - -
Pral4226g00004 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 287 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4226g00004 Pral-Chr4226 20880 28252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4226g00004 298 609 Calmodulin-binding Proteins AT3G56690 44.231 1.70e-80 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4226g00004 - - qsa:O6P43_032902 857.825