Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4223g00001 ATGGGAAGACCTTCTTCTTTTGTTTTCCTCTTCTTACTCCATTCCTTCATGGCCTCCTTAGCTTGGAGTGATACAAATATCACTACCGACAAATCTGCACTTCTTGTCTTTAAATCCGTTATCACTTCAGATCCACACAATTTCTTAGCTAATTGGTCTGTCTCTTCTTCTCCATGCAGTTGGATTGGTATCACATGCAATACTCGTCACGGAAGAGTCCATTCCTTGAATCTTGGTGGCATGGATCTTAAGGGTACCATATCTCCACAACTAGGAAATCTCTCATTCCTTGTTGAACTTGACCTCAGTGACAACGATTTTCATGATCAAATACCAAACGAGCTAGTTAAATTGCGTAGATTGGAACTACTCAATTTGAGCTGCAATGATTTTCATGGGCAAGTTCCAATAGGGATAGGAGGTTTATCTTCACTTGAGAAACTAAATCTTCGAAATAATAGTCTTAATGGAATTATTCCACCATCTCTATTCAATCTGACAATGTTAGAGACATTGGATTGGAATTTTAATTACATTGAAGGGACCATTCTGCTTGAGGTGGGAAGACTTGAGAAATTGACCATTTTACGTCTTGCGGGTAACAAGCTTTCAGGAAATATTCCCCGAACAATTTCCAACTTATCTTCACTTGAGTTATTGAGTTTGTCTTATAACAGTTTGTCAGGGAGCATCCCAAGTGAGATTGGGGACCTTTCACAATTGAAGAAATTGTATCTTGAAAACAATCAACTTGCTGGTTCAATACCATCTTCATTATTCAACAATTCAATGCTGCAAGGGATTGATCTTGGAGCCAATAACTTAGTTGGCGAAATACCCTCCACTTGGCATCAATGCACAGAATTATTAGTATTACAATTGGGGGATAACAAATTCAATAGAGAAAACATACCAATTGACATTGGAAATCTGACCAAACTTCAGTGGCTAAATCTTAACAACAGCAACGTGCAAGGAATCATTCCAAGTGAGATTGGAAATTTGACAAACCTCGAAATTCTTGTTCTTCGCTACAACAATTTGCAAGGTTTTATACCCAAAGGGATGGGCAAACTTAATAAACTTAATGTCTTAGACTTGGACTCTAATCATTTGCAAGGACCTATTCCTTCAAATATATTCAACATTTCGACATTGAGAATCTTACATCTTGATGGTAATTCCCTCTCTGGCCTTCTCCCGTCATATTTAGGAATTGACCTTCCCAACCTAGAGACCTTATGGCTGGAGGCAAATGAGCTAATTGGACAAATTCCAAACAGCATATCAAATGCTTCTAAGCTCATTACGTTAGATTTGTCATCGAATAAGTTTAGCGGAGCTATACCCTATCTAGTTGGAAATTTAAAAAATTTGATCAATTTAGCTTTGGATGGGAATGAATTGACTGGTTTGATTCCAAATACAGTTAGTAAATTACATAGTCTTCAACATTTAAGTCTCAACAACAATAGACTGCAAGGGTCCATTATAAATGACCTTTGTCAACTAGAAAGGCTAAGTGAGTTGAATCTTGCAAACAATATGTTTACAGGGGCAGTTCCAGAATGTTTTGGGAATACTTCTTTGCAAAAGTTGAATGTTAGCTCTAACAAATTGATTTCTCATATACCCTCTTCTCTTTGGAGTCTCAAAGATATTTTGGTTTTAGACATATCTTCCAATGCATTGAGTGGAATAATTTCACCAGAGATATCAAACTTGAGGGCAATTATACTATTGAATTTGTCAAGAAACCAAATTTCAGGAAGCATCCCCGCAACTATGGGTGAGTTGACAACTTTGCAAGACCTAGCTTTGGCTCACAACAAATTACAAGGGCCTATACCTAGATGGCTCAGTGGCATGATAAGTATTGAGTTAATAGATCTTTCTCATAATTACTTGTTTGGTGTGATTCCAAAGTCCTTAGAGTCACTACACTATCTTAAATCTATTGATCTTTCATACAATCTATTGGATGGAGAAATTCCAAATGGCGGTCCTTTTCAAAATTTTACTGCTCAATCTTTTATGATGAATAAAGATCTTTGTGGAAAACTCCAACTACAAGTCCGACCGTGTAGGAGAGGAAAGAAGCACATATCAAATAAAGTAATGCTGGTGATAAAATGCTCAATGCCTATCCTGGTTGTCATTTTTGTTTTTCTCGGTATTGTCTTTCTAAAGCATAACAGAGATGATGCTAACTATGCAATCAATAGGGATTTAACAAATTTGGATGCACCAACTAGGATATCCTATTATGACCTTCTACAAGGAACAAATGGATTTGATGAAAGTAATCTTCTTGGCTCTGGGAGTTTTGGATCAGTATATAAAGCAATTCTTCCAAATAAAAAGATAGTTGCTGTTAAAGTATTTAACGTAAACATGGAAGAAGCATTGAGAAGCTTTGATATTGAATGTGCTGCCATGTGCAATTTACGCCACCGCAATCTCATTAGAATTATTAGTAGCTGCTCAAATGATGATTTCAAGTCTCTAATCATGGAATTCATGTCAAATGGAAGTCTTGAGAGATGGTTGTACTCTCATAACTACTGTTTAGATATCCTGCAAAGGTTGAATATAATGGTTGATGTGGCAGCTGCGTTAGAGTATCTTCATCATGGTACTTCAACTCCGATTGTTCATTGTGACATAAAACCAGGTAATGTTTTGTTGGATGAAGATATGGTGGCTCATATAAGTGATTTTGGTATAGCTAAACTATTAGGTGAAGGACAGTTGGAAACTCGTACAAAAACATTGGCTACAGTTGGCTATATGGCACCAGAGTATGGATTAAAAGGAGTGGTTTCTTTTAAAGGAGATGTGTATAGCTATGGTATTGTTCTAATGGAGATGTTTACGAGAAAGAAGCCAACTGATGAAGTGTTTGTTGAAGGTTTTGGTTTAAAAGATTGGGTTAGCAAATCAGTACCACATTCAATCATCAATATTCTAGATGTCAATTTGCTGCATCAAGGAAATCCAAATATCAGCAATATATTACCACATATATCATCAATTTTTGACTTGGCATTAAGTTGTTGCACTGAATTACCTGAAGCAAGACTTATGATGACTGATGTTGTGGTCTCCTTAAAAAAGATAAGGTCATATTTACGTCAAATGTTAGAGATATGCCACTAG 3159 0.364 MGRPSSFVFLFLLHSFMASLAWSDTNITTDKSALLVFKSVITSDPHNFLANWSVSSSPCSWIGITCNTRHGRVHSLNLGGMDLKGTISPQLGNLSFLVELDLSDNDFHDQIPNELVKLRRLELLNLSCNDFHGQVPIGIGGLSSLEKLNLRNNSLNGIIPPSLFNLTMLETLDWNFNYIEGTILLEVGRLEKLTILRLAGNKLSGNIPRTISNLSSLELLSLSYNSLSGSIPSEIGDLSQLKKLYLENNQLAGSIPSSLFNNSMLQGIDLGANNLVGEIPSTWHQCTELLVLQLGDNKFNRENIPIDIGNLTKLQWLNLNNSNVQGIIPSEIGNLTNLEILVLRYNNLQGFIPKGMGKLNKLNVLDLDSNHLQGPIPSNIFNISTLRILHLDGNSLSGLLPSYLGIDLPNLETLWLEANELIGQIPNSISNASKLITLDLSSNKFSGAIPYLVGNLKNLINLALDGNELTGLIPNTVSKLHSLQHLSLNNNRLQGSIINDLCQLERLSELNLANNMFTGAVPECFGNTSLQKLNVSSNKLISHIPSSLWSLKDILVLDISSNALSGIISPEISNLRAIILLNLSRNQISGSIPATMGELTTLQDLALAHNKLQGPIPRWLSGMISIELIDLSHNYLFGVIPKSLESLHYLKSIDLSYNLLDGEIPNGGPFQNFTAQSFMMNKDLCGKLQLQVRPCRRGKKHISNKVMLVIKCSMPILVVIFVFLGIVFLKHNRDDANYAINRDLTNLDAPTRISYYDLLQGTNGFDESNLLGSGSFGSVYKAILPNKKIVAVKVFNVNMEEALRSFDIECAAMCNLRHRNLIRIISSCSNDDFKSLIMEFMSNGSLERWLYSHNYCLDILQRLNIMVDVAAALEYLHHGTSTPIVHCDIKPGNVLLDEDMVAHISDFGIAKLLGEGQLETRTKTLATVGYMAPEYGLKGVVSFKGDVYSYGIVLMEMFTRKKPTDEVFVEGFGLKDWVSKSVPHSIINILDVNLLHQGNPNISNILPHISSIFDLALSCCTELPEARLMMTDVVVSLKKIRSYLRQMLEICH 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4223g00001 1052 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 408 699 - -
Pral4223g00001 1052 Pfam Leucine rich repeat 506 564 IPR001611 GO:0005515
Pral4223g00001 1052 Pfam Leucine rich repeat 192 251 IPR001611 GO:0005515
Pral4223g00001 1052 Pfam Leucine rich repeat 601 660 IPR001611 GO:0005515
Pral4223g00001 1052 Pfam Leucine rich repeat 434 493 IPR001611 GO:0005515
Pral4223g00001 1052 Pfam Leucine rich repeat 313 372 IPR001611 GO:0005515
Pral4223g00001 1052 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Pral4223g00001 1052 Gene3D Ribonuclease Inhibitor 182 280 IPR032675 -
Pral4223g00001 1052 Gene3D Transferase(Phosphotransferase) domain 1 841 1049 - -
Pral4223g00001 1052 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 179 407 - -
Pral4223g00001 1052 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Pral4223g00001 1052 ProSitePatterns Protein kinases ATP-binding region signature. 771 793 IPR017441 GO:0005524
Pral4223g00001 1052 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 841 1049 - -
Pral4223g00001 1052 Pfam Protein kinase domain 766 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4223g00001 1052 FunFam Serine-threonine protein kinase plant-type 745 840 - -
Pral4223g00001 1052 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 454 1038 - -
Pral4223g00001 1052 Gene3D Ribonuclease Inhibitor 379 703 IPR032675 -
Pral4223g00001 1052 Gene3D Phosphorylase Kinase; domain 1 730 840 - -
Pral4223g00001 1052 Gene3D Ribonuclease Inhibitor 281 378 IPR032675 -
Pral4223g00001 1052 SMART LRR_sd22_2 190 216 - -
Pral4223g00001 1052 SMART LRR_sd22_2 408 434 - -
Pral4223g00001 1052 SMART LRR_sd22_2 359 385 - -
Pral4223g00001 1052 SMART LRR_sd22_2 238 270 - -
Pral4223g00001 1052 SMART LRR_sd22_2 480 503 - -
Pral4223g00001 1052 SMART LRR_typ_2 238 262 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 311 334 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 504 527 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 190 213 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 142 166 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 528 551 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 456 479 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 94 118 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 408 432 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 480 503 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 214 237 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 335 358 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 575 599 IPR003591 -
Pral4223g00001 1052 SMART LRR_typ_2 359 383 IPR003591 -
Pral4223g00001 1052 SUPERFAMILY Protein kinase-like (PK-like) 746 1037 IPR011009 -
Pral4223g00001 1052 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 27 178 - -
Pral4223g00001 1052 ProSiteProfiles Protein kinase domain profile. 765 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4223g00001 1052 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515
Pral4223g00001 1052 SMART serkin_6 765 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4223g00001 1052 SUPERFAMILY RNI-like 75 397 - -
Pral4223g00001 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
Pral4223g00001 1052 SUPERFAMILY RNI-like 269 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4223g00001 Pral-Chr4223 3027 20580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4223g00001 552 666 Receptor kinase-like Gene Family AT3G47570 33.094 9.28e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral4223g00001 Pkinase 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4223g00001 - K13420 pcin:129285519 1061.98