Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4219g00023 ATGACTCCGGAGGACCAAAGGGGCGATTTGAGTGATGACTATGTGGCCGCGAAAAAGTTTCCTGTGGGTATGAGTGTTCTGGCTGTTGATGACGACCCAATTTGTCTTAAAGTGTTGGAGACTCTGCTTGTCAAATGCGAGTATCGGGTTACTACAACTAATCAGGCGATTAAGGCTTTGAAAATGCTAAGGGAAAACAGGAACAAGTTTGACCTCGTCATTAGTGATGTAAATATGCCAGACATGGACGGATTTAAGCTCCTTGAGCTAGTGGGTCTTGAAATGGACCTACCTGTCATCATGTTGTCAGCACACAGTGATACAAGGCTTGTGATGAAGGGCGTTACCCATGGTGCATGTGACTATTTACTGAAACCTGTTAGAATGGAAGAGCTTAAGAACATATGGCAACATGTGGTTCGAAGAAAGAAGTTTGATAACAAAGACCAGAATAAGGCTTCTCAGGTGGAGAAGGCGAACAATATTTCTGGGGAAGGGAATCCAGGCATCGGTTCAGAAAATAATTCCGATCAAAGTAAAAAACTGGGTAAGAGGAGGAAGGACCAGGGTGAGGATGATGAAGAAGATGATGAAGACAATGTGCAAGAGAATGAGGAAGACCCATCAACACAGAAGAGGCCACGTGTAGTTTGGTCAGTTGAGCTGCACAGGAAATTTGTTGCTGCAGTTGATCAACTGGGACTTGAAAAGGCTGTTCCCAAGAAAATTCTTGACCTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCAAGCCATCTACAGAAATATAGGATCTATCTCAGGAAGGCAACTCAACAAGCTAAAATGGCTGCTGCATTGGGTGGAGAATCATCATACTTGCGGATGGGTTCATTAGAGGGTTTTGGAGAGTTTCGCACATTGTCTGGTTCTGGACGGCTCTCATCAACATTTGCATCTACTGGAATTTTTAGCAGATTGAACTCACCAGCTGCCTTGAACTTGAGAGGAATTGGTTCTTCTGGACTGATCCAGCCCAGTCAGTCTCAAAACTCAAGCATAGTCACAAACACACTTGGAAATCTTCAGCCATCATCTATCTTGTCTGCAAACTCAAGTTTATTTCAAAGCATTTCTTCAACAGAGCGTTGTCAATCTCAACCAAGCAACTGTGCTACTGGTATGAGGCCGTTTGGTTCAATTGATGATTCAGGTGGTTTTGCAGTTGCTAGTGGATTCCTAGACAGTAAACCTACTCTTGGTGGTGCAAACAATTCTGCGCCTTGTGTCTCAAGCAATCATTTGACGTTACCAGGAAGCTCAGAGCAATCTCAAAATGTGGGAGAATTTAGAAATCAATCTTCTTTTGGAGCTGCTCCTTTGAACTCAGAAACTTTAGGCATTTATGGCTCCAATTTGTTGGACTATACACGAAGCAACGAAAGCTGGCAGGGCATGGTTCACTTATCTAAATTTCCCTCCAATTCTTTGCCCTTAAACGAGACTTTAACTAATGATCAGCTACCTTCTAACAGCTTAAATGTTTCTTCCTCCAATACTTATATCAATAACAACCCAGTTGATTTTTCTTCTGCTGTTCCACTGGAGGATGTTAGAGGTGAACTACAATGTCAAGAAGGCCTAATTGGTAACGTGGTTCAGTCTTCACGTTACACGTTAAGGCAGACCTGGGAGCTGCAGAAGCAGGATTACAACCAAAACATGAACTGCAATTTCAATGCTGTGAATTCCCTGGTTTCTTCTAACGGAATCACAAGTAACATGGGGCAGAGTTTAAATCAAAATAATTCAACATGCAGCAAAAGGGTGGATGCATCTTTCATGGACCAATTCAATGGGCCTACCCCACTAATCTCTCAGCTTAACGAGGATGAGAGGTTCTCCTCAGATATGAGATTCAAATCTACTGATGCATACGAAGATGATTTCATTCGAAATATTGGATATTTGGATGACATAATGGGTTCAATGGTTAAACGGGAGCAACATGAGATGATACTGATGGATGGAGACACCCGATTTGATGCTTACCCGATTGGATCTTGTATCTGA 2055 0.4258 MTPEDQRGDLSDDYVAAKKFPVGMSVLAVDDDPICLKVLETLLVKCEYRVTTTNQAIKALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTRLVMKGVTHGACDYLLKPVRMEELKNIWQHVVRRKKFDNKDQNKASQVEKANNISGEGNPGIGSENNSDQSKKLGKRRKDQGEDDEEDDEDNVQENEEDPSTQKRPRVVWSVELHRKFVAAVDQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRIYLRKATQQAKMAAALGGESSYLRMGSLEGFGEFRTLSGSGRLSSTFASTGIFSRLNSPAALNLRGIGSSGLIQPSQSQNSSIVTNTLGNLQPSSILSANSSLFQSISSTERCQSQPSNCATGMRPFGSIDDSGGFAVASGFLDSKPTLGGANNSAPCVSSNHLTLPGSSEQSQNVGEFRNQSSFGAAPLNSETLGIYGSNLLDYTRSNESWQGMVHLSKFPSNSLPLNETLTNDQLPSNSLNVSSSNTYINNNPVDFSSAVPLEDVRGELQCQEGLIGNVVQSSRYTLRQTWELQKQDYNQNMNCNFNAVNSLVSSNGITSNMGQSLNQNNSTCSKRVDASFMDQFNGPTPLISQLNEDERFSSDMRFKSTDAYEDDFIRNIGYLDDIMGSMVKREQHEMILMDGDTRFDAYPIGSCI 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4219g00023 684 PIRSF RR_ARR_type-B 1 678 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pral4219g00023 684 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 269 IPR017930 -
Pral4219g00023 684 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 266 IPR006447 GO:0003677
Pral4219g00023 684 FunFam Two-component response regulator 209 272 - -
Pral4219g00023 684 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Pral4219g00023 684 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Pral4219g00023 684 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Pral4219g00023 684 Gene3D - 209 271 - -
Pral4219g00023 684 SMART REC_2 24 136 IPR001789 GO:0000160
Pral4219g00023 684 MobiDBLite consensus disorder prediction 146 213 - -
Pral4219g00023 684 CDD REC_typeB_ARR-like 26 140 - -
Pral4219g00023 684 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Pral4219g00023 684 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 360 IPR045279 GO:0009736
Pral4219g00023 684 Gene3D - 24 161 - -
Pral4219g00023 684 MobiDBLite consensus disorder prediction 154 177 - -
Pral4219g00023 684 SUPERFAMILY CheY-like 23 152 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4219g00023 Pral-Chr4219 118070 121961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4219g00023 16 334 Response Regulator Gene Family AT2G25180 59.271 2.05e-117 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pral4219g00023 Response_reg 7.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4219g00023 K14491 - gmx:100776075 858.211