Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4219g00017 ATGGCATCTCAGAATCTGACTGACTACGAACGGAAGAGACTTGAGAATATTCGCCGCAATGATGAAATGTTGGCTGCCCTTAAGATTCATTCCAAAGCCTCCGAGGTATCCGCCGCAGCGAAGCGCTCAAGGGGTGCTTCCAAATCTTACACTGTGAAATCTGAAAAGAAGCCTAAAACGGAAACCCCAGTGGTGATCCGACGGTCCTTGCGAACCAGAGGTATGCCACCCGATTCGGAGGGTTTAAAGGACGTCGCTTTGGATTCAGTCAGTGTTACTGAGAAATCACCAGCAAAAGTGCTGGGTCCTCTTTCCATGAGAGATGCTTACGAAGGGGATGAATTTGACGGCTCCTTCGTTGAAGCAGTTTTGGGTTTGGCTAAGAAGGAAGCTCAATCTCGTCGTCTGAATGGAGAAGAAATTGATAGCTGCGCAGATGGGGATGATTTTAAAGAAAGAAGCGTTGGGACTTCTTGTGATTTAGAAAGTAAAAATGAGGAATACAAGGTCGGAGGTTCGGTGAAGTTGGAATCGCTGACTTTGGATTCCGAGAACATAGCAAGGATTGTTCCGGTAAGGATAACTGCTGCACGGTTTTTTCCTTCAAGCAGTGTGAAAATGGTCGTGGCAGGTGATAAATTTGGAAATCTTGGATTCTGGGATTGTGATTCGGGCGGTAATGAAGGAAATGAAGTTCATTTGTACCACCCCCATCCAGCTGCCATTTCTGGGATCTTGGTTCAAAGACATTGCTTGTCCAAGATCTACACAAGTTGCTATGATGGATTGGTTCGCCTGATGGATGCTGAAAAAGAGATCTTTGACCTCGTCTTTAAAAGTGATGAAAGTTTGTACTCCCTGTCACAGCCAAACAACGATGCAAACTGCCTATACTTTGGCAAAGGTCCTGGAGGTTTGACCATTTGGGACAGTAGAACAGGGAAATGTACATCCCAATGGGTTTTGCATGATAGTAGGATTAATACTATAGATTTCAACCCAGAAAACTTTCACATTATGGCAACTAGTTCTTCCGACGGAACTGCCTGCACCTGGGATTTGAGATATAATAAGAAGTCTAAGCCGAGTGCCCTGAGGACATTTACTCACCGAAGGGCTGTGCATTCTGCTTACTTCTCCCCTTCTGGGCGTTCTTTGGCAACTACAAGCCTGGACGATACAATTGGCATATATGATGGAGCTAACTTTGAGAATGCATCGACTTTATTCCACTTCAATCAGACTGGCAGATGGCTTTCTACCTTCAGAGGAATATGGGGTTGGGATGATTCCTATATCTTCGTTGGCAATATGAAAAGAGGAGTTGACGTTATCTCCCCTGTTCACAAGAAAATTATCATGACTCTGCAGAGCCCACACATGTCGGCCATTCCGTGCAGGTTTGATGCTCACCCTTTTGAGATTGGGACTCTTGCGGGAGCTACTAGTGGGGGACAGGTTTATATGTGGACTTCATCCTAA 1482 0.4534 MASQNLTDYERKRLENIRRNDEMLAALKIHSKASEVSAAAKRSRGASKSYTVKSEKKPKTETPVVIRRSLRTRGMPPDSEGLKDVALDSVSVTEKSPAKVLGPLSMRDAYEGDEFDGSFVEAVLGLAKKEAQSRRLNGEEIDSCADGDDFKERSVGTSCDLESKNEEYKVGGSVKLESLTLDSENIARIVPVRITAARFFPSSSVKMVVAGDKFGNLGFWDCDSGGNEGNEVHLYHPHPAAISGILVQRHCLSKIYTSCYDGLVRLMDAEKEIFDLVFKSDESLYSLSQPNNDANCLYFGKGPGGLTIWDSRTGKCTSQWVLHDSRINTIDFNPENFHIMATSSSDGTACTWDLRYNKKSKPSALRTFTHRRAVHSAYFSPSGRSLATTSLDDTIGIYDGANFENASTLFHFNQTGRWLSTFRGIWGWDDSYIFVGNMKRGVDVISPVHKKIIMTLQSPHMSAIPCRFDAHPFEIGTLAGATSGGQVYMWTSS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4219g00017 493 FunFam WD repeat-containing protein 76 185 492 - -
Pral4219g00017 493 Gene3D - 185 493 IPR015943 GO:0005515
Pral4219g00017 493 PANTHER UNCHARACTERIZED 4 492 - -
Pral4219g00017 493 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 362 IPR001680 GO:0005515
Pral4219g00017 493 SMART WD40_4 361 399 IPR001680 GO:0005515
Pral4219g00017 493 SMART WD40_4 228 268 IPR001680 GO:0005515
Pral4219g00017 493 SMART WD40_4 313 353 IPR001680 GO:0005515
Pral4219g00017 493 ProSitePatterns Trp-Asp (WD) repeats signature. 340 354 IPR019775 -
Pral4219g00017 493 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 399 IPR001680 GO:0005515
Pral4219g00017 493 MobiDBLite consensus disorder prediction 36 62 - -
Pral4219g00017 493 MobiDBLite consensus disorder prediction 48 62 - -
Pral4219g00017 493 SUPERFAMILY WD40 repeat-like 190 490 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4219g00017 193 444 U-box Gene Family AT1G04510 24.907 2.62e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4219g00017 K24755 - qsa:O6P43_022157 631.328