Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4219g00003 ATGGCTTTTCATGACCACTTGCCTCAAGAACTGGCTTTTCAGCCTTTCACGGATGACCAACAGTTAAGTCAAAGCAGGGACATGCAGCGGATGATGCCGTTCTCAGCCGGCGCCGGGGGAGGTCCGGCCCCGACGTGGCTGGTGAATAGCGCTGGGTCGTCTCTCCGGCAGCAGAATTTTCTCCACTTGCAGTCTGACTCGGCCGATGATGTTCGGGGGAGTATGATACCTTCGTCGGAGAGGAGCAACGATCGAGACGGCGGCGATCGGAGCCGGGGCGACGGCAATTGTGAATCTGAGGATTTGGCGGAGTACAAAGCTGACATTTTGGGACACCCCCTTTACGACCAGCTCTTGTCGGCTCATGTGTCGTGTTTAAGGATTGCCACTCCGGTGGACCAGCTTCCTAGGATCGACGCTCAGCTTCAACAGTCACAGCGCGTGCTTGAGAAATACTCTGGACTTGGACATGGCGTTATTGATGAGAAGGAGCTTGACCAGTTCATGACACATTATGTTCTATTGCTCTGTGCTTTCAAAGAACAACTGCAACAACATGTCCGAGTTCATGCCATGGAAGCTGTCATGGCTTGTTGGGAGCTTGAGCAATCTCTTCAAGGCTTGACTGGTGTGTCTCCAGGAGAAGGGACAGGAGCAACAATGTCGGACGATGAAGATGAGCAGGTAGAGAGCAATGCTAACCTATACGAAGGTGGCCTTGATGGTGCTGACAGCCTAGGATTTGGTCCTCTTGTTCCCACTGAAAGTGAAAGATCTTTGATGGAGCGTGTGAGACAAGAATTGAAGCATGAATTAAAGCAGGGTTACAAGGAGAAGATTGTGGATATACGAGAAGAGATTCTGAGAAAGAGGCGTGCGGGGAAGCTGCCGGGTGACACAACCTCGCTTTTGAAATCTTGGTGGCAATCACATTCTAAATGGCCTTATCCTACTGAGGAAGACAAGGCAAGGCTGGTGCAGGAAACCGGCTTACAACTAAAGCAAATAAATAACTGGTTTATTAATCAAAGGAAAAGGAATTGGCATACGAATCCTTCATCATCTACCTCCTCTAAAAGCAAGCGCAAGAGTAATGCAGGAGAAACCAGTAACCAGAGCTTTATGTGA 1128 0.4973 MAFHDHLPQELAFQPFTDDQQLSQSRDMQRMMPFSAGAGGGPAPTWLVNSAGSSLRQQNFLHLQSDSADDVRGSMIPSSERSNDRDGGDRSRGDGNCESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSGLGHGVIDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQGLTGVSPGEGTGATMSDDEDEQVESNANLYEGGLDGADSLGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTSSKSKRKSNAGETSNQSFM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4219g00003 375 Pfam KNOX1 domain 105 146 IPR005540 GO:0003677|GO:0005634
Pral4219g00003 375 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Pral4219g00003 375 FunFam homeobox protein knotted-1-like 3 isoform X1 288 349 - -
Pral4219g00003 375 Pfam KNOX2 domain 161 209 IPR005541 GO:0003677|GO:0005634
Pral4219g00003 375 CDD homeodomain 290 351 IPR001356 GO:0003677
Pral4219g00003 375 SMART KNOX2_2 154 210 IPR005541 GO:0003677|GO:0005634
Pral4219g00003 375 SMART HOX_1 289 354 IPR001356 GO:0003677
Pral4219g00003 375 MobiDBLite consensus disorder prediction 82 98 - -
Pral4219g00003 375 Pfam Homeobox KN domain 307 346 IPR008422 GO:0003677|GO:0006355
Pral4219g00003 375 MobiDBLite consensus disorder prediction 344 375 - -
Pral4219g00003 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 117 361 - -
Pral4219g00003 375 SMART ELK_2 267 288 IPR005539 GO:0003677
Pral4219g00003 375 ProSiteProfiles ELK domain profile. 267 287 IPR005539 GO:0003677
Pral4219g00003 375 Gene3D - 293 370 - -
Pral4219g00003 375 MobiDBLite consensus disorder prediction 66 98 - -
Pral4219g00003 375 SUPERFAMILY Homeodomain-like 289 354 IPR009057 -
Pral4219g00003 375 ProSiteProfiles 'Homeobox' domain profile. 287 350 IPR001356 GO:0003677
Pral4219g00003 375 MobiDBLite consensus disorder prediction 1 25 - -
Pral4219g00003 375 Pfam ELK domain 267 288 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4219g00003 Pral-Chr4219 7014 10808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4219g00003 1 363 Homeobox Transcription Factor Family AT5G25220 62.648 4.37e-173 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral4219g00003 KNOX2 2.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4219g00003 - - pcin:129320455 684.871