Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4218g00012 ATGGCCGGAAATCTTCCTGGAGTAGAGTGTGCTCGAAGAAGAAGGTTTCATCAGAGCGGAGTTTGGTCCGATTCACCCTCCTCCATAGCTTCTCATACTTCCACTAGACGCTCTTCTTTCTGTTTGTACACTAGCAACCATGAATCTCTTTCTTCTTCCTCTTTACTGCAAAGAAACTTGATTTACCAGGCATACCCACAAGAAGTGCTGGGAGGTGCAGCTAGAGAAGCCAAACAGAGATTGGATGAGAGATTTGGAACACAGAGGAAAACAGAGAATAAAAGTAAGCAGAGCAGCAAAGAGAAGGTGAGAAATGAAGCAGAGTTGCAGATAGAGGTATATGGGTCAAAGAAAAATGGAAGCAGAAGATTCAGTTGGGGAAAATTGAGCTGGAAGGCTACAGAACAAGAAGAGTGTGCAGTGTGCTTAGAATCATTCAAGAATGGTGACACACTCATAAATCTTCCATGTGCACACAGGTTCCATTCAAGGTGTTTGGAGCCATGGCTGCAAAATAATTCTCACTGCCCTTGTTGCAGAACCACCATTATCTTTTCTCACTAG 564 0.4362 MAGNLPGVECARRRRFHQSGVWSDSPSSIASHTSTRRSSFCLYTSNHESLSSSSLLQRNLIYQAYPQEVLGGAAREAKQRLDERFGTQRKTENKSKQSSKEKVRNEAELQIEVYGSKKNGSRRFSWGKLSWKATEQEECAVCLESFKNGDTLINLPCAHRFHSRCLEPWLQNNSHCPCCRTTIIFSH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4218g00012 187 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 38 181 - -
Pral4218g00012 187 CDD RING-H2_PA-TM-RING 138 180 - -
Pral4218g00012 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 184 IPR013083 -
Pral4218g00012 187 MobiDBLite consensus disorder prediction 82 103 - -
Pral4218g00012 187 SMART ring_2 139 179 IPR001841 -
Pral4218g00012 187 FunFam Zinc finger family protein 113 185 - -
Pral4218g00012 187 SUPERFAMILY RING/U-box 129 185 - -
Pral4218g00012 187 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Pral4218g00012 187 Pfam Ring finger domain 138 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4218g00012 Pral-Chr4218 75300 76825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4218g00012 1 85 C3H Transcription Factor Family AT2G15580 52.128 1.17e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4218g00012 - - qsa:O6P43_034430 245.743