Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4218g00009 ATGGGTTCGACCAATAGTAGACTTCGGTCTCGCCCCTCCACCTCACGAGTCAATGGCACTAACCGCTTCAGATTCTCCTCCCTTCTCTGCGGTGGCTCCGCCGCTCGTTCCACTTATGAGATGGAAGATCAACCAAGTGAACTTCAGAGAGATTCTGCAACAGAATTTAATGATGAAAATCAGAAAGTTGTTGAAGAGTCATCTATATCATGTACAGAAGCTAGAATTGGTTGCAGGCCCCATACCGAAACTGCAAGCTCATCAGATACTAGAACTGAGTTGAGTGAGATTTCTACTGTTGAAGTTTCCTCGAGGAGTGTTTCTACTAGTTGTCAAACGAAGTACTTGTCTGAAAGTAAGGAGCTAGTTCCTCCTCACCAGGTAAGTGCTGTTCATAGTTATGATGAACCTTATAGGGATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGCAGTCGGTTCAGTGGATAGTGGTGTTTCTCAAATATCTCGCGAGACAATGTATCCGAGGAGCTCAACCTCTCACGACCAAGGGGATTCCAATGCTGATAATATTTCTATTGAGAATCACACTCATTCAGCTGTACCTATCCATAATTCTGAATTGGATCATGTTGCTCAAGTTTCCAATTTGCCTGTAACTTCTGAGTTGCCGGAGAATGCAACCCATCAGGAGACAATACCTTCAGGTTTAGGTTTTCTTGTGTCCAATAGGGAAAGAGGACAAGGAAATGATAGCATGTTTCAGGTTGATGTTGTCGCAATATCTTCCAACGTTTTGTCTGATGGCAATGTTGGTGTCAGTGATCGCGATGCTAGAAGGGATAGTAGAAGACTATTTTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCACGAACCTTTGTGTTCTCAGCTGGTGACGTTGATGATCCAAGTTCTCAAGATCAATGGCTTCTTGATTTGAGTAATAATTCCTCAAATGATGGGGTTGGAAATGATTCTGGATATTTGGGTAGTAGAATTCATAGATTGAATGAGCGGATGAGGCACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGTGGCCTTGATGAGATTGGTCGGTTGAATCCTTCTTGTCCATTAGGACTCCACCCTGATGGCATGTGTTCATGCGAGTCTTTCCAGATGGCTGAGGAATCCAGTACTCGTGCAAGTATATCAAGAATAGCTATGCTTGCTGAAGCTCTATTTGAGGTTCTGGATGAAATCCATCGCCAACCTGTATCTCTTGCCCTCTCCATGGTCTCTCTTCCAGCACCAGAATCAATTGTAGATTCTTTCCCTCTTAAGTGTCACAAAAAAATTGACACCTCTGATAATGGCAATGATGCTGAACAATGTTACATATGCCTGGCTGAGTATGAGGAAGGAGACAAAATACGCGTTCTTCCATGCAACCATGAGTACCACATGTCATGTGTTGATAAGTGGCTGAAAGAAATACATGGTGTATGCCCTCTTTGTCGTGGGAATGTTTGTGGAGGGTCCAACGAGTCTCCTGCCTCTAACGCAGAAGTACCATCTCAATGA 1614 0.4337 MGSTNSRLRSRPSTSRVNGTNRFRFSSLLCGGSAARSTYEMEDQPSELQRDSATEFNDENQKVVEESSISCTEARIGCRPHTETASSSDTRTELSEISTVEVSSRSVSTSCQTKYLSESKELVPPHQVSAVHSYDEPYRDSSNTASTSFVEQQSSDPVSVNVSANKDAVGSVDSGVSQISRETMYPRSSTSHDQGDSNADNISIENHTHSAVPIHNSELDHVAQVSNLPVTSELPENATHQETIPSGLGFLVSNRERGQGNDSMFQVDVVAISSNVLSDGNVGVSDRDARRDSRRLFWDAFSRRSSRRFGDSRTFVFSAGDVDDPSSQDQWLLDLSNNSSNDGVGNDSGYLGSRIHRLNERMRHSRSEIWERLRGGLDEIGRLNPSCPLGLHPDGMCSCESFQMAEESSTRASISRIAMLAEALFEVLDEIHRQPVSLALSMVSLPAPESIVDSFPLKCHKKIDTSDNGNDAEQCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGSNESPASNAEVPSQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4218g00009 537 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 536 - -
Pral4218g00009 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 523 IPR013083 -
Pral4218g00009 537 MobiDBLite consensus disorder prediction 1 20 - -
Pral4218g00009 537 MobiDBLite consensus disorder prediction 36 60 - -
Pral4218g00009 537 SMART ring_2 475 516 IPR001841 -
Pral4218g00009 537 SUPERFAMILY RING/U-box 462 520 - -
Pral4218g00009 537 MobiDBLite consensus disorder prediction 136 202 - -
Pral4218g00009 537 Pfam Ring finger domain 474 517 IPR001841 -
Pral4218g00009 537 ProSiteProfiles Zinc finger RING-type profile. 475 517 IPR001841 -
Pral4218g00009 537 MobiDBLite consensus disorder prediction 133 202 - -
Pral4218g00009 537 MobiDBLite consensus disorder prediction 43 60 - -
Pral4218g00009 537 FunFam Putative RING zinc finger domain superfamily protein 442 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4218g00009 Pral-Chr4218 65083 68942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4218g00009 386 521 C3H Transcription Factor Family AT5G45290 52.318 2.99e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4218g00009 - - pcin:129320229 848.195