Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4215g00023 ATGGACCTTCAACTAGGCCTCTCTCTCTCCACCCCCTTTGATTCCGATCATGATCTTTTCACTTCATTCTCAGTGTCTCATAAGAAACGCAGTTTCAGTGATCTCCTTCACCATGACTGTCTCAGAGACAGAGACGGCGACGGCGACGTCTTGCTTCCCACTCTGCCTCTCCTTCCCTTAACACCTTCCCACGAAGCTGACCTTGACGACGAAGACCTCCGTAACAGCTGCTCCATCGTCACCAAACATGATGGGGATGATGGTGGAGAATCTTCTGCAGCAGTCGGGTGGCCGCCATTGATGTCGCAGAGGAAGAAGGTTCGGGTTGAAGAAGATGGCATGGCGGAAATTCGTCAATACGTTAAAGTGAAGATGGAGGGAGAAGGAATTGGACGAAAGGTTGATCTTAGCCTGCATCATTCTTTTCAGAAGCTGAAGGAAACCTTGATGGCCATGTTTGGAAAATGTCATCAAAATTCAGAGTGCTATGAGTTAGCTTATCAGGACAAAGAAGGTGACTGGTTGCTCGCCGAGGATCTGCCATGGAAAGACTTCCTCCAGTGTGCTCAACGCCTCACATTGCTCAAGAGAACAAGTTAA 600 0.4867 MDLQLGLSLSTPFDSDHDLFTSFSVSHKKRSFSDLLHHDCLRDRDGDGDVLLPTLPLLPLTPSHEADLDDEDLRNSCSIVTKHDGDDGGESSAAVGWPPLMSQRKKVRVEEDGMAEIRQYVKVKMEGEGIGRKVDLSLHHSFQKLKETLMAMFGKCHQNSECYELAYQDKEGDWLLAEDLPWKDFLQCAQRLTLLKRTS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4215g00023 199 Pfam AUX/IAA family 26 156 IPR033389 -
Pral4215g00023 199 Pfam AUX/IAA family 161 197 IPR033389 -
Pral4215g00023 199 Gene3D - 113 199 - -
Pral4215g00023 199 ProSiteProfiles PB1 domain profile. 118 199 IPR000270 GO:0005515
Pral4215g00023 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 198 IPR003311 GO:0005634|GO:0006355
Pral4215g00023 199 SUPERFAMILY CAD & PB1 domains 116 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4215g00023 Pral-Chr4215 154912 156388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4215g00023 117 198 B3 DNA Binding Superfamily AT1G19850 33.721 2.45e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral4215g00023 AUX_IAA 1.6e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4215g00023 K14484 - gmx:100808466 162.925