Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4215g00004 ATGTCAAGCTGCAGCATCGATGTTGCCCCTGAGCAACTCTGCTACATCCCTTGCAACTTTTGCAACATTGTTCTTGCGGTGAGTGTTCCATGCAGCAGCTTGTTTGACATAGTGACCGTTCGATGTGGACACTGCAGCAATCTATGGTCAGTGAACATGGCTGCTGCGTTTCAGTCACTGTCGTGGCAAGATGTTCAGGCACCCGGATACAACAATCCGGAATACAGAATTGACACAGGTTCCTCTTCCAAGTGCAACAATAATATGCTTGCAATGAGAGCACCCACCAATCATGTAACTAAAGAAAGAATTGTGAACCGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCATATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAGGCTAATAATCCAGATATCAGTCACAGGGAAGCATTCAGTACAGCTGCGAAGAACTGGGCACACTTCCCTCACATTCATTTTGGGCTGATGTTGGAGACTAACAACAATCAAGCTAAGATGGAGAATGGGAGTGAGAACCATTTAATGACGACGGCAGCACTTTTGAACAAATGA 567 0.4603 MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVQAPGYNNPEYRIDTGSSSKCNNNMLAMRAPTNHVTKERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNNQAKMENGSENHLMTTAALLNK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4215g00004 188 CDD HMG-box_SF 114 150 - -
Pral4215g00004 188 Pfam YABBY protein 9 160 IPR006780 GO:0007275
Pral4215g00004 188 FunFam axial regulator YABBY 5-like 98 156 - -
Pral4215g00004 188 Gene3D High mobility group box domain 97 155 IPR036910 -
Pral4215g00004 188 PANTHER PROTEIN YABBY 6-RELATED 1 171 IPR006780 GO:0007275
Pral4215g00004 188 SUPERFAMILY HMG-box 103 153 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4215g00004 Pral-Chr4215 31174 35500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4215g00004 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 76.829 5.05e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pral4215g00004 YABBY 2.6e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4215g00004 K25796 - gmx:100499942 350.132