Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4214g00063 ATGAGTTTTCCTGATCACCACTCTGCCTTCATGCTATCGCCACTACCATTTGCGGCGGATGACGATTCCAATGGAAGGTGGCCGCAATTCCCCATCAACAACGAACTATTCGATTCACATTCCACATTTGATCAACTTCCTCCGTTCAAGAGGCCCAGGACATCTGAAAGCAGTCACTTTGATCCCTCGCCCTTCCCGCCGCCCATGAATTCCAGAATGCACCACCCACAAAATCCTCCAACAAATAGAGGAGGAACGAGCCACATTTTTTTTAAGACTCGCTTGTGTGCGAAATTCCGAATGGGTACCTGTAGGAATGGCGAGAATTGCAATTTCGCTCATGGCAATGAGGACATGAGGCAGCCACCTCCAAATTGGCAAGAACTTATTGGTTTACGCGATGAAGAACGGTCATCAGGAAATTGGGACGATGACCAGAAAATCATACATAAGATGAAGCTGTGTAAGAAGTACTACAATGGCGAGGAATGCCCTTATGGTGAAAGGTGCAACTTTCTTCATGAAGACCCGTCCAAGTTCAGGGATGATGCAGGGAGGTGCAGGGAGAGCTCAGCTATAAGCCTTGTAGCTAATGGATCTCCAAAGTCGCACTTGAATGGCCCTAGTAATCCAGACAATAATAAGACTGTCACCACTGGGTCTGATGGTTTCAGAACAAATGGGAAGGCTCCTTTCTGGAAGACTAAGTTATGTAGCAAGTGGGAGACAACAGGACAGTGCCCTTTCGGTGATAAATGTCATTTTGCCCATGGACAAGCAGAGTTACAAGTGCCTGGTGTACGCAGTGAAATAGAAGCTATTGGGGCTGCATCAATTCCTGTAAATGATGTGTCTCCTATCAATGCTGTAAGTATACTTGATTCAAAGGAGGAGGAGCAGAAAAAGAAGAATTTGTTGAAGTGGAAAATAAACAAGAAGGTCAATCGAATTTATGGTGATTGGCTCGATGACTTTCCATTGCCAAGGTAG 990 0.4556 MSFPDHHSAFMLSPLPFAADDDSNGRWPQFPINNELFDSHSTFDQLPPFKRPRTSESSHFDPSPFPPPMNSRMHHPQNPPTNRGGTSHIFFKTRLCAKFRMGTCRNGENCNFAHGNEDMRQPPPNWQELIGLRDEERSSGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPSKFRDDAGRCRESSAISLVANGSPKSHLNGPSNPDNNKTVTTGSDGFRTNGKAPFWKTKLCSKWETTGQCPFGDKCHFAHGQAELQVPGVRSEIEAIGAASIPVNDVSPINAVSILDSKEEEQKKKNLLKWKINKKVNRIYGDWLDDFPLPR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4214g00063 329 Gene3D - 226 264 - -
Pral4214g00063 329 Gene3D - 146 182 - -
Pral4214g00063 329 Gene3D - 85 121 - -
Pral4214g00063 329 PANTHER CCCH ZINC FINGER/TIS11-RELATED 53 181 IPR045877 GO:0003729
Pral4214g00063 329 SUPERFAMILY CCCH zinc finger 231 263 IPR036855 GO:0046872
Pral4214g00063 329 FunFam Zinc finger CCCH domain-containing protein 227 264 - -
Pral4214g00063 329 SUPERFAMILY CCCH zinc finger 88 121 IPR036855 GO:0046872
Pral4214g00063 329 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Pral4214g00063 329 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
Pral4214g00063 329 SUPERFAMILY CCCH zinc finger 149 176 IPR036855 GO:0046872
Pral4214g00063 329 MobiDBLite consensus disorder prediction 41 86 - -
Pral4214g00063 329 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Pral4214g00063 329 MobiDBLite consensus disorder prediction 198 223 - -
Pral4214g00063 329 FunFam Zinc finger CCCH domain-containing protein 39 146 178 - -
Pral4214g00063 329 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Pral4214g00063 329 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Pral4214g00063 329 SMART c3hfinal6 90 116 IPR000571 GO:0046872
Pral4214g00063 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 259 IPR000571 GO:0046872
Pral4214g00063 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 174 IPR000571 GO:0046872
Pral4214g00063 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Pral4214g00063 329 FunFam Zinc finger CCCH domain-containing protein 85 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4214g00063 Pral-Chr4214 374541 377328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4214g00063 232 268 C3H Transcription Factor Family AT1G68200 56.757 4.42e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4214g00063 zf-CCCH 2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4214g00063 - - pcin:129320676 617.846