Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4214g00027 ATGTCGTGCCATCTTCTCTTTTCTCCTTTTACGCTCCTTTTCAGCTATAGCAGTCGTTACAATGCTTCCTGTCTTTCCCTATTCTCTAACTACTCTGTGAAAATGAAGGACCCAGAAGAAGAACAAGTTAAATCAAGAAAGCCTATGCAGAAACACACGGATCGTAGAAGAAGAGGTAGGAGAAGAAGCCATTGGAAACCAGAGATATTAAAAGAAGAAGGGGTTGATTTAGAACTGAATCCTTATGCTGCTTCTTGCAATAGCCTTGAGTTCACCCATAGGCCTGGCTATGGCCAGCTTGGGACAAAGTGTGTGGTCAAAGCTAACCACTTTCTCGCAGATATATCAGCATCTGACTTGAGCCATTACAGTGTTAAGATAGCGCCTGAAGTTACTTCTCGTAAAATAAGCAAAGCTATCATTGCTGAGTTGGTGAGGCTTCATAGAAATACAGACTTGGGGATGAGGCTCCCCGTTTATGATGGAGGAAAGAATCTTTACACTGCTGGTTTGCTTCCTTTTATACACAAAGAATTCACCATAACATTGACCGAAGAAGATGAGGGTACAGGCAATACCTGGGAACGAGAGTTTAGAGTGAAAATCAAGTTCGTAACTCGTGTTAGCATGCATCAACTACGGGATCTTCTTAGTGGAAAACAAGTGAACACCCCACAAGAAGCACTTAACATCATTGATATTGTATTAAGGGAGCTTGCGGCTCAAAGTTACGTATCAGTTGGAAGGTCTCTCTATTCTGCTGATATAAAAAAACCACAGCAGCTAGGTGGTGGTTTGGAATCATGGCGTGGCTTTTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCGCTTAACATTGACATGTCATCTATGGCGTTTATTGAACCACTCCCTGTCATTGATTTCGTTGCTCAAATTCTGGGTAAAGATGTGCATTCAAAACCATTGTCAGATGCAGATCGTGTCAAGATTAAAAAAGCCTTAAGAGGTGTGAAAGTTGAAGTTACTCATAGAGGAAATGTTCGAAGGAAGTACAGGATTTCAGGACTGACATCACAGCCTACAAGAGAGCTTATATTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTTGATTACTTCCGGGAGATGTATGGCTATAGAATTAAGTATTCTCATCTACCATGCCTGCAAGTAGGGAACGAAAAGAAGGTGAATTATTTGCCAATGGAGGCATGCAAGATTGTTGGGGGCCAGAGATATACAAAAGGGCTAAACGAGAAGCAGATAACTTCTCTGCTTAAAGTTTCATGCCAAAGACCCCGTGAACAAGAGCTAGACATTCTGCAGACGGTTGAACAAAATGATTATGAGAATAACCCCTATGCGAAAGAGTTTGGTATCAGCATAGACGACAAGCTTGCTTCTGTTGAAGCTCGGGTTCTGCCTGCTCCCTGGTTGAAATATCACGATACAGGAAGAGAGAAAGAGTACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGCATAGTAAGATATTGGGCATGTATCAATTTCTCACGTAGCGTTCAAGAAAGCACAGCTCGTGGTTTTTGCCAACAGTTGGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGAGCCAGTAATTCCAATATATACAGCAAGACCAGATCAGGTTAAAAAGGCTTTGAAGTACGTACACTCTGCTGCTTTGGACAAACTTGAGGGGAAAGAGCTGGAATTGCTCATTGCCATTCTTCCTGACAACAACGGCTCTCTGTATGGTGATCTCAAAAGGATTTGTGAAACAGATCTAGGGTTGATTTCTCAGTGCTGCCTCACAAAACACGTCTTCAAGGTTAACAGACAATACCTGGCAAATGTGGCGCTTAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTGCTTTTGGATGCGTTGAGTTGGAGAATTCCACTTGTTAGTGACATTCCGACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAAGATTCTTCTCCATCCATTGCTGCTGTTGTAGCCTCACAGGACTGGCCTGAAGTAACAAAATATGCAGGACTTGTGTGTGCTCAGCCTCATCGTGAAGAACTTATTCAAGACCTTTTCAAGTGTTGGAAAGATCCTCAGCGTGGCATAGTTTATGGTGGCATGATCAGAGAGCTCTTACTCTCATTTCAGAAGGCAACTGGACAAAAACCATTGAGGATCATATTTTACAGGGATGGGGTAAGCGAAGGACAATTCTACCAGGTTTTGTTGTATGAGCTTGATGCGATCCGCAAGGCTTGTGCATCATTGGAACCTAGTTATCAACCTCCAGTAACATTTGTTGTGGTTCAAAAGCGGCATCACACTAGACTCTTCTCGAGCAATCATGATGACAGAAACAGCACTGACAGGAGTGGCAACATCTTACCTGGGACCGTGGTGGATTCTAAGATCTGTCATCCTACAGAATTTGACTTTTATTTATGCAGTCATGCAGGAATACAGGGCACGAGTAGACCAGCTCACTATCATGTCCTCTGGGACGAGAACAAATTCACTGCAGACGAGATTCAATCTTTAACCAACAACTTATGCTACACGTATGCAAGATGCACGAGATCTGTTTCCGTAGTGCCTCCAGCATACTATGCTCATCTGGCAGCTTACAGAGCTCGATTCTACATGGAACCTGATGTGCATGAGAATGCTAAAGCACGAGGGGCAAGATCAAATGATGGCTCAGTTCGGCCATTGCCAGCTCTGAAAGAGAAGGTGAAGAATGTTATGTTTTACTGTTGA 2832 0.4273 MSCHLLFSPFTLLFSYSSRYNASCLSLFSNYSVKMKDPEEEQVKSRKPMQKHTDRRRRGRRRSHWKPEILKEEGVDLELNPYAASCNSLEFTHRPGYGQLGTKCVVKANHFLADISASDLSHYSVKIAPEVTSRKISKAIIAELVRLHRNTDLGMRLPVYDGGKNLYTAGLLPFIHKEFTITLTEEDEGTGNTWEREFRVKIKFVTRVSMHQLRDLLSGKQVNTPQEALNIIDIVLRELAAQSYVSVGRSLYSADIKKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFREMYGYRIKYSHLPCLQVGNEKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQELDILQTVEQNDYENNPYAKEFGISIDDKLASVEARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSIVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQEPVIPIYTARPDQVKKALKYVHSAALDKLEGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKVNRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQRGIVYGGMIRELLLSFQKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSSNHDDRNSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHENAKARGARSNDGSVRPLPALKEKVKNVMFYC 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4214g00027 943 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 88 908 - -
Pral4214g00027 943 SMART Piwi_a_2 586 907 IPR003165 GO:0003676
Pral4214g00027 943 MobiDBLite consensus disorder prediction 38 65 - -
Pral4214g00027 943 FunFam protein argonaute 10-like 655 943 - -
Pral4214g00027 943 Pfam Argonaute linker 2 domain 442 484 IPR032472 -
Pral4214g00027 943 FunFam Protein argonaute-2 291 417 - -
Pral4214g00027 943 SUPERFAMILY PAZ domain 293 452 IPR036085 GO:0005515
Pral4214g00027 943 SMART PAZ_2_a_3 302 434 IPR003100 GO:0005515
Pral4214g00027 943 Pfam PAZ domain 302 428 IPR003100 GO:0005515
Pral4214g00027 943 SUPERFAMILY Ribonuclease H-like 575 908 IPR012337 -
Pral4214g00027 943 Pfam N-terminal domain of argonaute 102 236 IPR032474 -
Pral4214g00027 943 CDD Piwi_ago-like 456 906 IPR045246 -
Pral4214g00027 943 ProSiteProfiles PAZ domain profile. 298 412 IPR003100 GO:0005515
Pral4214g00027 943 MobiDBLite consensus disorder prediction 49 64 - -
Pral4214g00027 943 Pfam Mid domain of argonaute 495 572 IPR032473 -
Pral4214g00027 943 Pfam Piwi domain 587 906 IPR003165 GO:0003676
Pral4214g00027 943 Pfam Argonaute linker 1 domain 246 295 IPR014811 -
Pral4214g00027 943 Gene3D - 655 943 IPR036397 GO:0003676
Pral4214g00027 943 SMART DUF1785_2 245 297 IPR014811 -
Pral4214g00027 943 ProSiteProfiles Piwi domain profile. 586 907 IPR003165 GO:0003676
Pral4214g00027 943 CDD PAZ_argonaute_like 297 411 - -
Pral4214g00027 943 Gene3D - 476 649 - -
Pral4214g00027 943 FunFam Argonaute 10 476 649 - -
Pral4214g00027 943 Gene3D paz domain 292 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4214g00027 Pral-Chr4214 190177 196462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4214g00027 91 943 Eukaryotic Initiation Factors Gene Family AT5G43810 75.377 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4214g00027 K11593 - gmx:100810235 1620.52