Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4214g00023 ATGACGATTGACGACGAGAGCTCCATATACGTTGGCGGTCTTCCCTATGGTGCCACAGAAGATACCATCCGCACCGTCTTTGATCTGTATGGCGCCATTCTTGATGTCAAGATTATCAATGATGTCCGGACTAGGGGCAAGTGCTACTGTTTTGTAACTTTCACAAATCCTCGATCAGCATTTGATGCAATCAATGACATGAATGGAAGGACCATTGATGGGCGTGTGGTTAAAGTAAATGGGGTGAGGACGCGAGGTGGAAGATCAAATTTTGGTCGAGAACTTATTCATCATGACACTGATAGGAATGGAGACTGGGATCGTGGTAGAGATCAAGATCCTGATTATAATCATGACAGGGACAGGCACAGGAATCGAAGTAGAGGTTGGTCTCGAGAGCGTGATAGATCTCGAGAGCATGATAGGTCTCGAGGCTTTGACTATGAAGGGGATAGAAGATATGAGCATGGACGTTATCATGATCAAGAAAGAGAACCTTTGCATGTTAAAGATCGAAGTCAAGAGAGACATCAGGATGATGATGAGCAAGAACGAGGCAAAGTAGTTGGTCAAGCTGTGCAAAGAGACTATGACCTAGATTATGACACAGACAGGGAGATTGACAGGACTTATGATCCTGACAGAAGTTTTGATGGGGATAGAAATGAACACTCAAGGAGAAACAATGGATTAAATGTTGCCAAGCGACCTAACATAGATTTTTCATCTGACTCAAATGGTAACCACGATGATGAGATTGCAGATCAATTAGAGAGGTCAACTCAAAGGCTTGGTCAGCTGAAAAAAGAGGTCTCTCAGTTGGAAGAGAAGTTACAAGAGAAACGATGTCTTGTAGTGGATTTACAAAAGCAATCTAGGAAACTGGAGGATGCATTAATTAATGCAAAGAAACATTCTTCATATCGTCAGATGCAATTGACCAAGCTGCACAAATGCTTTATGCAAGTGAAAGAGTACACAGAGCGACTAAAAACCTGTGAAAAAGAACTTCAGACTATGGTTGATACGGCAATGTTAGAGAGTGATGGTGATGGCGAAGCTGTTGGCTTAAAGGATGCACAAATCATGAGTGGATATGTATGA 1104 0.4239 MTIDDESSIYVGGLPYGATEDTIRTVFDLYGAILDVKIINDVRTRGKCYCFVTFTNPRSAFDAINDMNGRTIDGRVVKVNGVRTRGGRSNFGRELIHHDTDRNGDWDRGRDQDPDYNHDRDRHRNRSRGWSRERDRSREHDRSRGFDYEGDRRYEHGRYHDQEREPLHVKDRSQERHQDDDEQERGKVVGQAVQRDYDLDYDTDREIDRTYDPDRSFDGDRNEHSRRNNGLNVAKRPNIDFSSDSNGNHDDEIADQLERSTQRLGQLKKEVSQLEEKLQEKRCLVVDLQKQSRKLEDALINAKKHSSYRQMQLTKLHKCFMQVKEYTERLKTCEKELQTMVDTAMLESDGDGEAVGLKDAQIMSGYV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4214g00023 367 Gene3D - 2 95 IPR012677 -
Pral4214g00023 367 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 99 - -
Pral4214g00023 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Pral4214g00023 367 Coils Coil 257 305 - -
Pral4214g00023 367 MobiDBLite consensus disorder prediction 90 230 - -
Pral4214g00023 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Pral4214g00023 367 SMART rrm1_1 8 80 IPR000504 GO:0003723
Pral4214g00023 367 MobiDBLite consensus disorder prediction 87 251 - -
Pral4214g00023 367 CDD RRM_SF 9 80 - -
Pral4214g00023 367 Coils Coil 323 343 - -
Pral4214g00023 367 PANTHER GEO13361P1-RELATED 6 191 - -
Pral4214g00023 367 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4214g00023 Pral-Chr4214 175277 178979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4214g00023 7 73 Eukaryotic Initiation Factors Gene Family AT2G23350 32.836 5.74e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4214g00023 - - vun:114179118 456.832