Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4212g00072 ATGATGAAAATGGACTACGGCGGTGGCCATCCCAGTAACTGGGTACGGCTCTGTGATTCTTGCCGGTTGTCTGCTTCCACGCTTTACTGTCACAACGATTCAGCGTACCTCTGTTCTTCCTGTGATGGACAAATTCACGCGATGGGGTCTCCTTGTTGGTGCCACAATCGTGTGAAACTTTGCGGATCGTGTGAGAACGCTCCGGTGGCTTTCATCTGCAAGGCCGATGATGCTTCGCTGTGTGTCGACTGTGACTTTGAAATTCACTCTGCCAATCCAATTGCTAGCCGACACAATAGGGTCCCTGTGTCTCCCTTGTCTCATATACTCAACGACAACGTGGCAACTCCCGATGAACAGCCTAATTACGAGGTTGTCGTCAAAAACAACATAAGTAGCAAGGAAGTGGACGAGCAAGAAGCTGATTCGTGGTTACTGCTTGATTCTGCTGATACTATAGACAGCCAGGTTGATGATGGTTTTATGTTCGGAGTAGCAGAGGATGATCACCATGCTTACGTGGGGCTTGTTGAAGAGAGTGATTCATCCACAAAGTTCAAAAATTTCCAGGAAGATCGTGATCAGGGGAAGCAAGCTTATAGCTTCTCTGAAGAGATGAAAGAAAGTGACAGTGTTGTGCCAGTTCAATCGGTTGCAGCTCAGCCTAAGCAATTGCAGCCACAACACCAGCAAAATATTTACTTCAACGTGGAGAAGAAACCATCAAGAGTGGCTTTCACTAATTACGCCTCGAATTGCCGGAGCGTAGCTGTTCCATGTATGGGTTCTCAAATGCTGCAAAGTGGGACGATGTGTGACATGCCAGGGTTCAGATTTCCCAAAGGAACAGAGACATTTCCAAGTGCTTCAGTTCCAATGCAAATCCACTTTGGACATATGAACAGGAAAGCTGGAGTGGAGAAATACAGAGAGAAGAAGAAATCTAGAAAGTTCGAGAAGAGAATCAGATATGCTTACAGGAAAGCCTACGCTGAGAAACGACCCAGAGTTAAGGGCAGATTTGTTAAGAGACAAGACTTAACCTCAGATGAAGCCGTGCCTCTCCATTGA 1071 0.465 MMKMDYGGGHPSNWVRLCDSCRLSASTLYCHNDSAYLCSSCDGQIHAMGSPCWCHNRVKLCGSCENAPVAFICKADDASLCVDCDFEIHSANPIASRHNRVPVSPLSHILNDNVATPDEQPNYEVVVKNNISSKEVDEQEADSWLLLDSADTIDSQVDDGFMFGVAEDDHHAYVGLVEESDSSTKFKNFQEDRDQGKQAYSFSEEMKESDSVVPVQSVAAQPKQLQPQHQQNIYFNVEKKPSRVAFTNYASNCRSVAVPCMGSQMLQSGTMCDMPGFRFPKGTETFPSASVPMQIHFGHMNRKAGVEKYREKKKSRKFEKRIRYAYRKAYAEKRPRVKGRFVKRQDLTSDEAVPLH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4212g00072 356 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Pral4212g00072 356 Pfam B-box zinc finger 57 103 IPR000315 GO:0008270
Pral4212g00072 356 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Pral4212g00072 356 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 346 IPR045281 GO:0009909
Pral4212g00072 356 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Pral4212g00072 356 SMART bboxneu5 13 51 IPR000315 GO:0008270
Pral4212g00072 356 SMART bboxneu5 56 103 IPR000315 GO:0008270
Pral4212g00072 356 CDD Bbox1_BBX-like 60 103 - -
Pral4212g00072 356 CDD Bbox1_BBX-like 17 58 - -
Pral4212g00072 356 Pfam CCT motif 302 344 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4212g00072 Pral-Chr4212 369411 371465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4212g00072 14 344 C2C2-CO-like Transcription Factor Family AT3G02380 42.604 2.18e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral4212g00072 zf-B_box 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4212g00072 - K12135 pcin:129321006 582.408