Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4212g00065 ATGACCAACCTGATTCTTGTGGAATTTGCTACGCCGATCATGCCACCTCAATCAGAGGTTTACCATGTTCATGGAAATATCACAACAGGTCCTGCGGATCCTTATGCTGAAACTAGGTGTAGTGTCTGTAACGGCGAGGAAGATGAAAGTTTTCTTCTACTATGTGATCTTTGTGATACTGCTTCTCATACATATTGTGTTGGCCTTGGATATGTTGTGCCCGAAGGTGATTGGTTTTGTCAAGATTGTACTGTTTCCAGGGCAATTAATGACAATAACGATGTAGACCATCAATGTGACATACCGACAGCTGAGTCAAGTGTAACAATCCTTGATATTGTGAGAGAGCCAAACAGCCAGAGGGTCCAAAGGTCAAGACCGTCTCCTCTTGTTACCCCTTTACCTTATAGGGCGCATAGAAACAAAGATAGAAATCATGACATAAGTTTTACCCCTTTACCTGACAGGGTGAATAGAAACAAAGATATAAGTCGTGACTTGAGTGCCCGCACATTGCGCCGATGTCGCAATGTGCAACGTAATATACGAGCTTTTCGTGAAAACTGGAATGCCTTGAGAAATGGTTCATTAAGGTTCTCTTCCGATTCGTCTGAATCTGGTGTTAGACATGGTAAACAGCAGAACACTTATTCCTTATCTCATGGAAAGTCATATCAAATGCATTCTTCGGCTTCCATGAGCCATCAGCAATCTACAATTCATGGTAGCCCTTCTAATAACAAATTGAATGAGGGAGACTCAGAAGATGTCAACAAGGCTTGGAAAATGCTGGAGAGAGCAAAGATGATGGGAAAGACTCATCATAAAGGCAGCATTTTTCCACAGGGATTACTTGTAGGACCTAGAAAAGCACCAAGAATTCATTGTAATGATCAAGAATTGAAACTTCATTCATGTGGAAGATCCACAGGAAATGAGAAGCGATGCAGCTTTTCTAGTTTTAATAAGGATATGGACAATCGCTGGCCTCTAGAGTTGGGAGGGAAAAAGCATAGTGGGGTCACGCATAAGGGGACAACAAATATTAAGGACCAAGCTTCTCATTTGGAAGAATGCTATGAGCCTTCATTGCCTAGAAAAGCGCTGAGTAGCATTCTATGTGCTCCCCATCGTGAAAATGGGGAGAGAAATTTTGCAAAGGAACAAAGTAGTTCTTCTTGGGTAGTAACTTCAGTGGGTTCTGCTCCTTCTGATGGCAAGTTTGGTAGTGCGTCTTCGTCAAGCAGGGATGCAGGTGAAAAAAAGCGGTTGTCTAAAAAAACTGGGGATGCAAACTCGCAAGAAAGTGAAGATGCTAAAAACGAGATCAAGTCTCTTGTCAAGCTCAATCTGAAAGTCCTCAGTAAAGATAAACGATTAGGTGCTGATGCATTCAAGGAAATTGCCAGGCACTCAACCCACACCATCTTGGCCGCTTGTCGATTGGAGCATGAAAAGCTGGGCGTAAGCTCCTCGAGCTCTTTATGCAGTCATAGGGGTGATAATGAGCGTTTTCACAAGTCCACCTTAATGCCTAATTGTTGCCGACAATGTTTTTACATGTTTGTCAAGAATGTGGTCAACTCCACTATGATGGAGAAGGTGGGTGGGGGTGGATCTTCCTGA 1626 0.4293 MTNLILVEFATPIMPPQSEVYHVHGNITTGPADPYAETRCSVCNGEEDESFLLLCDLCDTASHTYCVGLGYVVPEGDWFCQDCTVSRAINDNNDVDHQCDIPTAESSVTILDIVREPNSQRVQRSRPSPLVTPLPYRAHRNKDRNHDISFTPLPDRVNRNKDISRDLSARTLRRCRNVQRNIRAFRENWNALRNGSLRFSSDSSESGVRHGKQQNTYSLSHGKSYQMHSSASMSHQQSTIHGSPSNNKLNEGDSEDVNKAWKMLERAKMMGKTHHKGSIFPQGLLVGPRKAPRIHCNDQELKLHSCGRSTGNEKRCSFSSFNKDMDNRWPLELGGKKHSGVTHKGTTNIKDQASHLEECYEPSLPRKALSSILCAPHRENGERNFAKEQSSSSWVVTSVGSAPSDGKFGSASSSSRDAGEKKRLSKKTGDANSQESEDAKNEIKSLVKLNLKVLSKDKRLGADAFKEIARHSTHTILAACRLEHEKLGVSSSSSLCSHRGDNERFHKSTLMPNCCRQCFYMFVKNVVNSTMMEKVGGGGSS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4212g00065 541 MobiDBLite consensus disorder prediction 222 253 - -
Pral4212g00065 541 SUPERFAMILY FYVE/PHD zinc finger 31 87 IPR011011 -
Pral4212g00065 541 MobiDBLite consensus disorder prediction 383 440 - -
Pral4212g00065 541 MobiDBLite consensus disorder prediction 416 440 - -
Pral4212g00065 541 MobiDBLite consensus disorder prediction 386 415 - -
Pral4212g00065 541 SMART PHD_3 39 84 IPR001965 -
Pral4212g00065 541 PANTHER F18C1.6 PROTEIN 19 535 - -
Pral4212g00065 541 MobiDBLite consensus disorder prediction 222 251 - -
Pral4212g00065 541 Pfam PHD-finger 39 85 IPR019787 -
Pral4212g00065 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 97 IPR013083 -
Pral4212g00065 541 ProSiteProfiles Zinc finger PHD-type profile. 37 86 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4212g00065 Pral-Chr4212 326740 329355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4212g00065 17 87 C2H2 Transcription Factor Family AT3G01460 31.944 1.36e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4212g00065 PHD 2e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4212g00065 - - pcin:129296896 655.21