Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4212g00063 ATGTCGTTTGTTCCGAGCTCCCCGAATAAACGGCTCAAAATCCAAGACCAGGAGGAATCCGATCATCACCTCGACTTGCCACCTTCGTTCGAGGATGACCAACCTGATTCTTGTGGAATTTGCTACGCCGATCATGCCACCTCAATCAGAGGTGAAATTGATTGTTGCAATCATTTTTTTTGCTTCGTCTGCATCATGGAATGGTCCAAGCATGAGTCTCGATGCCCCCTCTGTCGGCAAAGATTCTCCACCGTTCGTCGCCCCCCTAAGCCCGGCGTCTTCCTCTCCTCGCGTCTTGTTAGAGTCCCTATTCGTGACCAGGTTTACCATGTTCATGGAAATATCACAACAGGTCCTGCGGATCCTTATGCTGAAACTAGGTGTAGTGTCTGTAACGGCGAGGAAGATGAAAGTTTTCTTCTACTATGTGATCTTTGTGATACTGCTTCTCATACATATTGTGTTGGCCTTGGATATGTTGTGCCCGAAGGTGATTGGTTTTGTCAAGATTGTACTGTTTCCAGGGCAATTAATGACAATAACGATGTAGACCATCAATGTGACATACCGACAGCTGAGTCAAGTGTAACAATCCTTGATATTGTGAGAGAGCCAAACAGCCAGAGGGTCCAAAGGTCAAGACCGTCTCCTCTTGTTACCCCTTTACCTTATAGGGCGCATAGAAACAAAGATAGAAATCATGACATAAGTTTTACCCCTTTACCTGACAGGGTGAATAGAAACAAAGATATAAGTCGTGACTTGAGTGCCCGCACATTGCGCCGATGTCGCAATGTGCAACGTAATATACGAGCTTTTCGTGAAAACTGGAATGCCTTGAGAAATGGTTCATTAAGGTTCTCTTCCGATTCGTCTGAATCTGGTGTTAGACATGGTAAACAGCAGAACACTTATTCCTTATCTCATGGAAAGTCATATCAAATGCATTCTTCGGCTTCCATGAGCCATCAGCAATCTACAATTCATGGTAGCCCTTCTAATAACAAATTGAATGAGGGAGACTCAGAAGATGTCAACAAGGCTTGGAAAATGCTGGAGAGAGCAAAGATGATGGGAAAGACTCATCATAAAGGCAGCATTTTTCCACAGGGATTACTTGTAGGACCTAGAAAAGCACCAAGAATTCATTGTAATGATCAAGAATTGAAACTTCATTCATGTGGAAGATCCACAGGAAATGAGAAGCGATGCAGCTTTTCTAGTTTTAATAAGGATATGGACAATCGCTGGCCTCTAGAGTTGGGAGGGAAAAAGCATAGTGGGGTCACGCATAAGGGGACAACAAATATTAAGGACCAAGCTTCTCATTTGGAAGAATGCTATGAGCCTTCATTGCCTAGAAAAGCGCTGAGTAGCATTCTATGTGCTCCCCATCGTGAAAATGGGGAGAGAAATTTTGCAAAGGAACAAAGTAGTTCTTCTTGGGTAGTAACTTCAGTGGGTTCTGCTCCTTCTGATGGCAAGTTTGGTAGTGCGTCTTCGTCAAGCAGGGATGCAGGTGAAAAAAAGCGGTTGTCTAAAAAAACTGGGGATGCAAACTCGCAAGAAAGTGAAGATGCTAAAAACGAGATCAAGTCTCTTGTCAAGCTCAATCTGAAAGTCCTCAGTAAAGATAAACGATTAGGTGCTGATGCATTCAAGGAAATTGCCAGGCACTCAACCCACACCATCTTGGCCGCTTGTCGATTGGAGCATGAAAAGCTGGGCGTAAGCTCCTCGAGCTCTTTATGCAGTCATAGGGGTGATAATGAGCGTTTTCACAAGTCCACCTTAATGCCTAATTGTTGCCGACAATGTTTTTACATGTTTGTCAAGAATGTGGTCAACTCCACTATGATGGAGAAGGTGGGTGGGGGTGGATCTTCCTGA 1890 0.4418 MSFVPSSPNKRLKIQDQEESDHHLDLPPSFEDDQPDSCGICYADHATSIRGEIDCCNHFFCFVCIMEWSKHESRCPLCRQRFSTVRRPPKPGVFLSSRLVRVPIRDQVYHVHGNITTGPADPYAETRCSVCNGEEDESFLLLCDLCDTASHTYCVGLGYVVPEGDWFCQDCTVSRAINDNNDVDHQCDIPTAESSVTILDIVREPNSQRVQRSRPSPLVTPLPYRAHRNKDRNHDISFTPLPDRVNRNKDISRDLSARTLRRCRNVQRNIRAFRENWNALRNGSLRFSSDSSESGVRHGKQQNTYSLSHGKSYQMHSSASMSHQQSTIHGSPSNNKLNEGDSEDVNKAWKMLERAKMMGKTHHKGSIFPQGLLVGPRKAPRIHCNDQELKLHSCGRSTGNEKRCSFSSFNKDMDNRWPLELGGKKHSGVTHKGTTNIKDQASHLEECYEPSLPRKALSSILCAPHRENGERNFAKEQSSSSWVVTSVGSAPSDGKFGSASSSSRDAGEKKRLSKKTGDANSQESEDAKNEIKSLVKLNLKVLSKDKRLGADAFKEIARHSTHTILAACRLEHEKLGVSSSSSLCSHRGDNERFHKSTLMPNCCRQCFYMFVKNVVNSTMMEKVGGGGSS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4212g00063 629 SMART PHD_3 127 172 IPR001965 -
Pral4212g00063 629 SMART ring_2 38 78 IPR001841 -
Pral4212g00063 629 SUPERFAMILY RING/U-box 37 93 - -
Pral4212g00063 629 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
Pral4212g00063 629 Pfam PHD-finger 127 173 IPR019787 -
Pral4212g00063 629 ProSiteProfiles Zinc finger PHD-type profile. 125 174 IPR019787 -
Pral4212g00063 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 186 IPR013083 -
Pral4212g00063 629 ProSiteProfiles Zinc finger RING-type profile. 38 79 IPR001841 -
Pral4212g00063 629 MobiDBLite consensus disorder prediction 504 528 - -
Pral4212g00063 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 101 IPR013083 -
Pral4212g00063 629 CDD RING-HC_Topors 35 82 - -
Pral4212g00063 629 MobiDBLite consensus disorder prediction 474 503 - -
Pral4212g00063 629 MobiDBLite consensus disorder prediction 471 528 - -
Pral4212g00063 629 MobiDBLite consensus disorder prediction 310 339 - -
Pral4212g00063 629 Pfam Ring finger domain 36 79 IPR001841 -
Pral4212g00063 629 PANTHER F18C1.6 PROTEIN 22 623 - -
Pral4212g00063 629 MobiDBLite consensus disorder prediction 310 341 - -
Pral4212g00063 629 SUPERFAMILY FYVE/PHD zinc finger 121 174 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4212g00063 Pral-Chr4212 326740 329448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4212g00063 104 175 C2H2 Transcription Factor Family AT3G01460 30.137 4.56e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4212g00063 PHD 2.5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4212g00063 - - pcin:129296896 857.825