Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4212g00062 ATGGAGCTCCCTCAGGCGCGTTCCTTCGGAACCGAAGCAAGAAAACCGACCCATGACTTTCTCTCACTGTACAGTCATTCAACTGCCCAACAAGATCCGAGGCCACCATCTCAAGGAAGTTACCTGAAAACGCATGACTTCTTGCAGCCACTAGAACGTTTTGAGAAGAAAGCAAACGCCAAGGAAGAAGCATCGGATGAGATATCATCAGTGGTTCAAAAGTCACCACCTCCTGCACCGCCGCCGCCGCCGCCATGTGTTGAGCACATCCTTCCTGGAGGCATTGGGACTTACAGTATCAGCCACGTCTCGTATTTTAGTGATCCCAGGGTTCCAAAGCCGGAGGCTTCCTTTTTCAGTGTGTCTCCTTGTGAAGCAAGTACAGATAGAAATGAGGAGAACTCAAACTGCAGTTCATATACTGGAAGTGGTTTCGCTTTGTGGGAAGAGTCTGCCGTTAAGAAGGGAAAGACAGGGAAGGAGAATAACGTGGGAGATAAACCCGTTATATCAGAGTGCGCAGCCAAGACAGGGCAGTGGTCGCTGACTGAGAGAGCATGTCAGTCATTTGTTAAGAATAGTCAGCATAGCTTCAATTCTGTCACTTCCACTCAGAAAACTGGGCAGAAAAACCAGAGTTTTATTGATATGATAAAGTCCGCCAAGGATTGCTCTCAGGATGAGGAGCCAGACAATGAAGAAGCATTCATTTTTAAGAAAGAATCTTCAAATACCCAGAGAGGCGAATTGAGAGTGAAAGTGGATGGAAAGAGTTCTGACCAAAGGCCAAACACACCACGATCAAAACATTCTGAAACAGAACAGCGAAGAAGGAGCAAAATTAATGACAGATTCCAGATGTTGAGAGAGATTATTCCACACAGTGACCAGAAAAGAGACAAGGCATCTTTTCTGTTGGAGGTCATTGAGTACATTCAATTTTTACAAGAAAAGGTTCATAAGCACGAAGATTCATACCAAGTTTGGAATCAAGAGAGAGAGAAATTGACCCCAAGGAAGAACAATCACAGGCCTTCAGAAAGCTATGATGATCCATCTCGTGTAATAAATAGTGGGTCAGGTCCTTCTTCAATGGTACTGTTTCCTTCAAAGAGGGAGGAGGAAAATTTTAGTATCTCCCCAACAATTACTGGGGGCACAAAGAACGTAGATGCTGGCACTAGTTCTGCAACTACAGTGAGGGCAATGAATCAACATCCTGGAATAACCAATAAGGCCATGCCAATTCCTAACCCTTCACAGCCAAATTTCTTCAATCCTAGCCACAGTGGCGGCCCAGGGGTGACTGCTGCTAGTGATAAGCTTAAAGAGAAAGAGCTCACTATTGAAAGCGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATTCACTAACACAAGCACTGAAGAATTCAGGAGTGGATTTGTCACAGGCTAACATCTCCGTGCAAATTGAGCTTGGCAAGCGAGCAAACATCAGACCAATTGGACCAACTTCTGGGGTTAAGGATGAAGTTACTTCTAGCAACCAAGGGATGAAGCGCTCTAAAGTTTGTAGCGTAGAGGAGACTGACCTAGCAGTAAAGAAGCTAAAGACAAGCAGAAGCTGA 1620 0.4506 MELPQARSFGTEARKPTHDFLSLYSHSTAQQDPRPPSQGSYLKTHDFLQPLERFEKKANAKEEASDEISSVVQKSPPPAPPPPPPCVEHILPGGIGTYSISHVSYFSDPRVPKPEASFFSVSPCEASTDRNEENSNCSSYTGSGFALWEESAVKKGKTGKENNVGDKPVISECAAKTGQWSLTERACQSFVKNSQHSFNSVTSTQKTGQKNQSFIDMIKSAKDCSQDEEPDNEEAFIFKKESSNTQRGELRVKVDGKSSDQRPNTPRSKHSETEQRRRSKINDRFQMLREIIPHSDQKRDKASFLLEVIEYIQFLQEKVHKHEDSYQVWNQEREKLTPRKNNHRPSESYDDPSRVINSGSGPSSMVLFPSKREEENFSISPTITGGTKNVDAGTSSATTVRAMNQHPGITNKAMPIPNPSQPNFFNPSHSGGPGVTAASDKLKEKELTIESGAISISSVYSKGLLDSLTQALKNSGVDLSQANISVQIELGKRANIRPIGPTSGVKDEVTSSNQGMKRSKVCSVEETDLAVKKLKTSRS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4212g00062 539 MobiDBLite consensus disorder prediction 1 86 - -
Pral4212g00062 539 SMART finulus 271 321 IPR011598 GO:0046983
Pral4212g00062 539 MobiDBLite consensus disorder prediction 21 44 - -
Pral4212g00062 539 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 537 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pral4212g00062 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 315 IPR011598 GO:0046983
Pral4212g00062 539 MobiDBLite consensus disorder prediction 505 520 - -
Pral4212g00062 539 MobiDBLite consensus disorder prediction 48 68 - -
Pral4212g00062 539 Coils Coil 312 332 - -
Pral4212g00062 539 MobiDBLite consensus disorder prediction 496 521 - -
Pral4212g00062 539 MobiDBLite consensus disorder prediction 332 350 - -
Pral4212g00062 539 Pfam Helix-loop-helix DNA-binding domain 267 316 IPR011598 GO:0046983
Pral4212g00062 539 MobiDBLite consensus disorder prediction 332 362 - -
Pral4212g00062 539 MobiDBLite consensus disorder prediction 237 284 - -
Pral4212g00062 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 335 IPR036638 GO:0046983
Pral4212g00062 539 CDD bHLH_AtBIM_like 264 338 - -
Pral4212g00062 539 Gene3D - 263 340 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4212g00062 Pral-Chr4212 311056 317471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4212g00062 1 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.127 5.30e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4212g00062 HLH 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4212g00062 - - adu:107468970 650.973