Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4212g00051 ATGGGAAGAGGCAGAGTTGAGCTCAAGAGAATAGAGAACAAAATCAATAGGCAGGTTACATTCGCTAAGAGAAGAAATGGGCTTCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCAGCAGTGGCTCCAGCATGACGAAAACTCTGGAGAAGTACCAGAAGTCCAGCTATGGTGCACTGGAGTCCAGCCAGCCAATGAGTGACACTCAGAGTAGCTATCAGGAATACCTGAGACTTAAAGCAAGGGTCGAAGTCCTACAACGTTCGCAGAGGAACCTTCTTGGGGAAGATCTGGCCCAAATGAACACAAAGGAGCTGGAGCAGCTTGAGAATCAAGTCGAGGCAGCACTGAAGAATATCAGGTCCACAAAGACTCAGTATATGCTTGACCAGCTTGCTGATCTTCAGAACCGGGAGAAAGTGCTGGAGGAAACTAATAGAGCTCTGAGGAGTAAGTTAGAAGAAAAAAGCAACTCGCAAGTTGCTCTAAGAATGGGTTGGGAAGGGGCGGGAGGGTCTGAAGCGATCCATTACCCTCGTTTTCCTGATCAATCTGAAGCATTTTTCCAGCCTTTGGGAGTCAATCCCAATTTGCAAATCGGATATAATCAGGTTGGAGGGGAGGATGTAAATGTTGGAGGAGCAGCATTGAACGTTCATGGATTCGTGCCCGGGTGGATGCTTTAA 741 0.475 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSGSSMTKTLEKYQKSSYGALESSQPMSDTQSSYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTKELEQLENQVEAALKNIRSTKTQYMLDQLADLQNREKVLEETNRALRSKLEEKSNSQVALRMGWEGAGGSEAIHYPRFPDQSEAFFQPLGVNPNLQIGYNQVGGEDVNVGGAALNVHGFVPGWML 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4212g00051 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4212g00051 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4212g00051 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4212g00051 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4212g00051 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4212g00051 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pral4212g00051 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pral4212g00051 246 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4212g00051 246 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pral4212g00051 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4212g00051 246 Coils Coil 150 177 - -
Pral4212g00051 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pral4212g00051 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4212g00051 246 FunFam MADS-box transcription factor 1 13 89 - -
Pral4212g00051 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4212g00051 246 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4212g00051 Pral-Chr4212 249201 253098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4212g00051 1 246 MADS-box Gene Family AT5G15800 58.015 3.80e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4212g00051 K-box 4.9e-27 No_clan