Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4212g00050 ATGGAGTCCTGGAGTTATGATTCTGAAGAAAAAGGGTTTGTGTCCAACGATACACACTCACCTCCTAATACACTTCCCAGGAGTAAAGGTTCCATCTTGGGATGGGAATTGAAGAGTCCCTCTGGTATCTCCAGCGACATGTTATCCTCCGGTCAGCCAAATGTAGAATATCAAGGTTTTGAGGAAACGGGTTTTCCAGAAATGTTGGACAAACAATTGTCCGATGATCCAATTAGTAGTGTGTCGAACAGAAAGCTCGACGGTGGTCCTTCTATGGTTGCTGCCCCAATTGCGATTTCTGGAGTTGAAGACTCCAATTCGAAGCTTTCTAACTCCGTGGTTGAATCTAACGGTCGAGATTCGCTCATTGATTTGAAGCTTGGACGATTTGGCGATCCCAGAGAAGCCATGGATTCGGCATTCTCCAAAGGAACCCCTATTTTATCTTCTTCAGAATCATCGGCTCCGACCAAGAGAGTACGAGGTTCGGGGGTTCATTCACAAACCGCGTACTGTCAAGTTTATGGATGTAATAAGGATCTGAGCGCCTCTAAAGACTACCACAAGAGGCACAAAGTTTGCGAGGCTCACTCGAAGACTTCCAAAGTTATAGTCAACGGCATCGAACAGAGATTTTGTCAGCAATGTAGTAGGTTCCACTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGCAAACGCCTTCAAGGTCATAACGAGCGCCGGCGAAAGCCACAAGTCGGTGTTCACTCTGGAAAGGCTGCAAGATTGCTTCCACCATACAGTGATGGTAGATTCCAGGGCATCATGCCAACAAGTGCATCTTTTATCTGCCAAGAAATACTTCCTACCGGGACTTTGCGCTCCGATAAATATGGGACAAATGACTGGTGGAGACCTATAAAGAACGAAGATGGGAATGATTTTAGGCATCTTCCTGCTGTTCCTATCGCAAATGGACACCCTCCGTCAAGATCTCTATTCCCTTCATATAATGAAAGACAGTTTCCTTTTCTTCATGAAAATGGTGCTACATCCAGTACTGGAAGCATCTTCTGTGAGAACAACAGTCAGTATCCACCTCCTGCCATGGGTCCAAATTCTGTGGCGCAACCTTTATTCCAAGACACTTCCTTAAGAAGTGAGGACTTCAACGTTTATGATACCACATCAACGATTCAGGGACTATCGGGAGTTTCAGATTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCGGAACTCTTCAAGCCACTCATCAGGAATCCCCATGGCTCGCCCATTGGTCATTCCAAGCAGCAGCCATAGTAATTACAGCCAGAGTCAGCTTACTGAGAACATCGTAGGAATGAGCTCACAGGCTTCTGCAAGTGCAGGAGTTTCAGATAGGTTTCGATCTGAGATGAATCCTGCCACTGATGGAAGTCATCTTAGTCCTGTGCTGGTATCAGACAATAGTAATATTCTCCATTTTGAAATGTCAGATGGCATGTTCCAGGGGCCAGGTTTTGTGAACATAAAAGATGGTCTTTCCTGTGAAGATGGCCCTACTATTGACTTGCTTCAACTATCATCACAGCTCCAGCGAGTTGAGCATCAGAGGCAATCCTCGCAGGCGAAGCAAGAAAATGATTCTTCCCGGTCTCTTCGGACTGCTTAA 1665 0.4595 MESWSYDSEEKGFVSNDTHSPPNTLPRSKGSILGWELKSPSGISSDMLSSGQPNVEYQGFEETGFPEMLDKQLSDDPISSVSNRKLDGGPSMVAAPIAISGVEDSNSKLSNSVVESNGRDSLIDLKLGRFGDPREAMDSAFSKGTPILSSSESSAPTKRVRGSGVHSQTAYCQVYGCNKDLSASKDYHKRHKVCEAHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLQGHNERRRKPQVGVHSGKAARLLPPYSDGRFQGIMPTSASFICQEILPTGTLRSDKYGTNDWWRPIKNEDGNDFRHLPAVPIANGHPPSRSLFPSYNERQFPFLHENGATSSTGSIFCENNSQYPPPAMGPNSVAQPLFQDTSLRSEDFNVYDTTSTIQGLSGVSDSGCALSLLSSQSRNSSSHSSGIPMARPLVIPSSSHSNYSQSQLTENIVGMSSQASASAGVSDRFRSEMNPATDGSHLSPVLVSDNSNILHFEMSDGMFQGPGFVNIKDGLSCEDGPTIDLLQLSSQLQRVEHQRQSSQAKQENDSSRSLRTA 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4212g00050 554 MobiDBLite consensus disorder prediction 1 37 - -
Pral4212g00050 554 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 61 541 IPR044817 GO:0003677
Pral4212g00050 554 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
Pral4212g00050 554 MobiDBLite consensus disorder prediction 531 554 - -
Pral4212g00050 554 Pfam SBP domain 172 245 IPR004333 GO:0003677
Pral4212g00050 554 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Pral4212g00050 554 Coils Coil 522 542 - -
Pral4212g00050 554 SUPERFAMILY SBT domain 170 250 IPR036893 GO:0003677|GO:0005634
Pral4212g00050 554 MobiDBLite consensus disorder prediction 140 162 - -
Pral4212g00050 554 MobiDBLite consensus disorder prediction 143 162 - -
Pral4212g00050 554 MobiDBLite consensus disorder prediction 8 27 - -
Pral4212g00050 554 MobiDBLite consensus disorder prediction 70 90 - -
Pral4212g00050 554 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4212g00050 Pral-Chr4212 234882 239218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4212g00050 123 544 SBP-box Gene Family AT1G69170 35.294 1.71e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4212g00050 SBP 2.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4212g00050 - - gmx:100777766 741.88