Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4212g00045 ATGCGGGAGACCAGAAGTGAAAGAGCTCCCCTCTTGGAAAACGGGGAAGGAAGAAAGAGAGATGATGCCTCAGCTGATCAGCTGAATGACCTTGAACATGGTGACGCTCTACCGGCTGCAAATGTGGGATTCTGTCGAGTGCTTTCACTTGCGAAGCCTGATGCTGGGAAGTTGATACTTGCGACAGTGGCTCTGTTGGTTGCATCCACTTCAAGCATCTTAATTCCAAAATTTGGTGGGAAGATAATTGACATTGTTTCGGGAAATATTTCAACCCCTGAGGAGAAAGCTAAAGCTCTGGATGCTGTCAAGAGCACCATACTATCTATCTCTCTGATTGTTGTTGTGGGTTCAGTTTCCACGGCACTGCGAGCATGGCTTTTCTCTTCTGCCAGCGAAAGGGTTGTTGCACGGTTGAGAAAAAGATTGTTTAGTCATCTTGTACACCAAGAGATAGCCTTCTACGATGTTACTAGAACTGGAGAGCTTCTAAGCAGGCTATCTGAAGATACACAGATAATAAAGAACGCCGCAACTACCAATCTCTCTGAGGCCTTAAGAAACTTATCAACTGCCTTTATCGGTCTCTCTTTCATGTTGGCAACATCATGGAAGTTAACTTTATTGGCTTTGGCTGTTGTACCTGCTATTTCTGTTGCTGTTCGTAAATTTGGCCGGTTCTTGCGTGAACTTTCTCACAAAACTCAAGCTGCAGCAGCAGTAGCTTCTTCGATCGCTGAGGAATCCTTTGGCGCTATAAGAACGGTGAGATCTTTTGCCCAAGAAGAACATGAAATAGCACGATATTCTGAGAAAGTTGAAGAAACACTTAAGCTTGGACTTAAACAGGCTAAAGTGGTTGGACTCTTCTCTGGAGGCCTCAATGCAGCATCTACACTGTCCGTTATTGTAGTTGTTATATATGGAGCTAACTTGACAATCAAGGGTTCCATGTCTGCGGGTGACCTTACATCTTTCATTCTTTATAGTTTAACAGTGGGGTCTGCTGTATCTGGTCTGTCATCATTGTATACAGTAGCAATGAAAGCTGCAGGTGCTAGCAGACGGGTGTTTCAACTTCTGGATCGAGTCTCTTCCATGCCTAAGTCAGGAAACAAGTGTCCTTTGGGTGGCCAAGATGGTGAAGTGGAACTAGATGATGTTTGGTTTGCCTATCCATCACGTCCAAGTCATACAATACTCAAGGGAATCACATTGAAACTGCAGCCTGGCTCAAAGGTTGCTCTAGTTGGTCCTAGCGGTGGTGGAAAGACTACTATAGCTAACTTGATTGAAAGATTTTATGACCCAACCAAGGGAAAGATCCTGCTGAATGGGGTTCCTCTGGTAGAAATATCACATGAGCATCTACACAAAAAGATCAGTATAGTGAGTCAGGAACCTATCCTTTTCAACTGTTCTATAGGGGAGAACATAGCCTATGGACTTGATGGCAAAGTTAATCTTGTTGACATAGAAAATGCGGCTAAAATGGCCAATGCACATGAATTTATATCGAAGTTCCCAGATAAATACCAAACACATGTTGGAGAACGTGGGGTTCGGCTTTCGGGAGGACAAAAGCAAAGAGTAGCTATTGCTAGAGCACTGCTTATGGACCCAAAAATTCTTCTCCTGGATGAAGCCACTAGTGCCTTGGATGCTGAAAGCGAATACCTAGTACAGGATGCCATGGATTCTCTGATGAAGGGAAGGACAGTTCTGGTTATTGCTCATAGGCTGTCTACTGTTAAAAGTGCAAGTATTGTAGCAGTTATTTCGGATGGTCAAATAGTTGAAAGTGGCACCCACGATGAACTTCTCAACAAGAATGGTGTTTATACTTCCTTAGTCAGAAGACAACTACAAACAGCAAAAACTGAAATCTAG 1890 0.436 MRETRSERAPLLENGEGRKRDDASADQLNDLEHGDALPAANVGFCRVLSLAKPDAGKLILATVALLVASTSSILIPKFGGKIIDIVSGNISTPEEKAKALDAVKSTILSISLIVVVGSVSTALRAWLFSSASERVVARLRKRLFSHLVHQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMLATSWKLTLLALAVVPAISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEEHEIARYSEKVEETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGSMSAGDLTSFILYSLTVGSAVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNKCPLGGQDGEVELDDVWFAYPSRPSHTILKGITLKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLVEISHEHLHKKISIVSQEPILFNCSIGENIAYGLDGKVNLVDIENAAKMANAHEFISKFPDKYQTHVGERGVRLSGGQKQRVAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKSASIVAVISDGQIVESGTHDELLNKNGVYTSLVRRQLQTAKTEI 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4212g00045 629 SMART AAA_5 410 604 IPR003593 GO:0016887
Pral4212g00045 629 PIRSF ABC_prm/ATPase_B 7 629 - -
Pral4212g00045 629 Pfam ABC transporter 401 551 IPR003439 GO:0005524
Pral4212g00045 629 Gene3D - 381 625 IPR027417 -
Pral4212g00045 629 Gene3D ABC transporter type 1, transmembrane domain 110 380 IPR036640 GO:0005524|GO:0016020
Pral4212g00045 629 MobiDBLite consensus disorder prediction 1 24 - -
Pral4212g00045 629 CDD ABC_6TM_AtABCB27_like 61 357 - -
Pral4212g00045 629 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 34 626 IPR039421 -
Pral4212g00045 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 621 IPR027417 -
Pral4212g00045 629 CDD ABC_MTABC3_MDL1_MDL2 383 621 - -
Pral4212g00045 629 SUPERFAMILY ABC transporter transmembrane region 46 362 IPR036640 GO:0005524|GO:0016020
Pral4212g00045 629 ProSitePatterns ABC transporters family signature. 523 537 IPR017871 GO:0005524|GO:0016887
Pral4212g00045 629 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 59 349 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4212g00045 629 FunFam ABC transporter B family member 25 110 380 - -
Pral4212g00045 629 FunFam ABC transporter B family member 25 381 623 - -
Pral4212g00045 629 Pfam ABC transporter transmembrane region 58 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4212g00045 629 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 620 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4212g00045 Pral-Chr4212 204156 210002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4212g00045 75 621 Calmodulin-binding Proteins AT2G36910 37.726 8.87e-102 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4212g00045 - - qsa:O6P43_022927 1046.19