Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4212g00024 ATGGCGAAATCAGTTACCTCCGACGCGATTTCGATATTGCTTGCCAACCCCTCGCCAGATTCTTCCTCGGAGCTTCCAGAGATCATCGTCCAAGTTCTGGATCTCAAGCAAAGCGGTAATAGATTCATGTTCACGGCTAGCGATGGAAAGGTGAAGTTAAGGGCAATCCTCCCTTCTAATCAAAATTCCCAAGTCATTTCAGGAAGTATTCAGAACCTGGGTCTTATCCGCATAGTTGATTATACTCTCAATGATATCCCAAATAAGTCAGAGAAATATCTTATTGTTACAAAATGTGAATCAGTCTCTCCCGCTCTTGAGATGGAGATAAAAACAGAAGTCAAGAGTGAGTGCCCCACCATTCTTTTGAATCCAAAGCAAGAGTGTGAAATCAATAGTGAGGCGAAAAGTGAAGCTGCTGGCATTATTTTGAGACCAAAGCAAGAAATGGTGTCCAAATCTGCCGCTCAGATTGTATACGAACAACACACAAACACTGCCCCTTCTGTACGGATGGCCATGACACGCAGGGTGCGCCCTCTTGTTTCCTTAAATCCTTATCAGGGTAATTGGACTATAAAGGTTCGTGTAACAAACAAAGGGAATATGCGTTCCTACAAGAATGCTAGAGGGGAAGGTTGTGTCTTCAACGTGGAATTGACAGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAATGAGGCTGCCAGGAAATTTTATGACAGATTTGCGCTTGGGAAGGTTTACTATATTTCCAAGGGAACTTTAAAGGTTGCCAACAAACAGTTCAAGACTGTCCAAAACGATTATGAGATGACGCTGAATGAGAACTCTGAGGTGGAAGAGGCAGCCAATGAAGAAAGTTTTGTTCCAGAAACAAAATTTAACTTTGTCCCGATTGATCAGCTGGGTCCTTTTGTCAATAGGAGTGACCTTGTTGATGTCATGGGAGTTGTTCAGAATGTGTCTTCCACTATGAGCATTCGAAGGAAGAGTAACAATGAGAGTATTTCAAAGCGTGATATTACTATTGCTGATGAAACAAAGAAGACAGTGGTTGTGTCTTTGTGGAGTGAACTTGCAACTAATGTAGGGCAAGAATTGCTGGACACTGCTGATAAACTTCCAATAGTTGCAATCAAGTCTCTCAAGGTTGGGGATTTTCAAGGCGTTTCCTTGTCAACTATAAGCAGAAGTGCAGTTCTGATTAATCCTGATATACCTGAAGCGAAAAGGCTTAGATGCTGGTATGAGTCTGAAGGTAAAGACGCTCCCATGGCTTCCATTGGCTCTAGTGCATCTGTAACCAAAAATGGAATGAGATCAGTGTACTCTGACCGTATTTCTCTTGCTCAAATAACCTCAAACAAGTCCTTGGGAGAGGACAAGCCTGCATTTTTCAGTATCAGGGCACATATAAGCTCCATTAGGCCTGATCAGACAATGTGGTATCGGGCTTGTACAACTTGCAACAAGAAAGCCACTGAAGCCATTGGATCTGGCTATTGGTGTGAAGGTTGCCAGAAAAACGTTGAAAGCACTTTAAGGTATATTTTGGTTGCAAGAGTTTCTGATGCAAGCGGCGAAGCTTATGTCTCGATCTTCAATAATGAAGCTGAGGCGATCGTTGGGTGTTCTGCTAATGAGCTAGATAGCCTAAAATCAGAGGAGGGAGAAGATAATCCGTATCAAATGAAATTGAAACAAGCGACCTGGGCCCCTCATCTATTCCGTGTTAGTGTTTCTCAGAATGAGTACATGAACGAGAAGAGGCAGAGGATAACTGTCCGAGCTGTTGCTCCAGTTGATTATGCTGCTGAGTCAAGAATTCTCCTGGAAGAGATTTCAAAGATGACAGCTCCACAATAA 1872 0.4268 MAKSVTSDAISILLANPSPDSSSELPEIIVQVLDLKQSGNRFMFTASDGKVKLRAILPSNQNSQVISGSIQNLGLIRIVDYTLNDIPNKSEKYLIVTKCESVSPALEMEIKTEVKSECPTILLNPKQECEINSEAKSEAAGIILRPKQEMVSKSAAQIVYEQHTNTAPSVRMAMTRRVRPLVSLNPYQGNWTIKVRVTNKGNMRSYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFALGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEESFVPETKFNFVPIDQLGPFVNRSDLVDVMGVVQNVSSTMSIRRKSNNESISKRDITIADETKKTVVVSLWSELATNVGQELLDTADKLPIVAIKSLKVGDFQGVSLSTISRSAVLINPDIPEAKRLRCWYESEGKDAPMASIGSSASVTKNGMRSVYSDRISLAQITSNKSLGEDKPAFFSIRAHISSIRPDQTMWYRACTTCNKKATEAIGSGYWCEGCQKNVESTLRYILVARVSDASGEAYVSIFNNEAEAIVGCSANELDSLKSEEGEDNPYQMKLKQATWAPHLFRVSVSQNEYMNEKRQRITVRAVAPVDYAAESRILLEEISKMTAPQ 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4212g00024 623 CDD RPA1_DBD_A 180 283 - -
Pral4212g00024 623 Gene3D - 177 286 IPR012340 -
Pral4212g00024 623 FunFam Replication protein A subunit 290 429 - -
Pral4212g00024 623 NCBIfam replication factor-a protein 1 (rpa1) 3 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4212g00024 623 Gene3D - 291 430 IPR012340 -
Pral4212g00024 623 CDD RPA1_DBD_B 313 419 - -
Pral4212g00024 623 FunFam Replication protein A subunit 177 286 - -
Pral4212g00024 623 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Pral4212g00024 623 CDD RPA1_DBD_C 451 618 IPR047192 -
Pral4212g00024 623 Gene3D - 431 619 IPR012340 -
Pral4212g00024 623 Pfam Replication factor-A C terminal domain 467 611 IPR013955 -
Pral4212g00024 623 Gene3D - 4 112 IPR012340 -
Pral4212g00024 623 Pfam Replication protein A OB domain 309 405 IPR031657 -
Pral4212g00024 623 FunFam Replication protein A subunit 433 619 - -
Pral4212g00024 623 PANTHER REPLICATION FACTOR A 1, RFA1 191 582 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4212g00024 623 FunFam Replication protein A subunit 4 114 - -
Pral4212g00024 623 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
Pral4212g00024 623 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Pral4212g00024 623 SUPERFAMILY Nucleic acid-binding proteins 446 619 IPR012340 -
Pral4212g00024 623 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Pral4212g00024 623 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4212g00024 Pral-Chr4212 138701 142260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4212g00024 1 623 Core DNA Replication Machinery Family AT5G08020 66.933 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4212g00024 K07466 - qsa:O6P43_002222 971.074