Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4212g00019 ATGGACGGGCCCATTTGTAGCCCAAACTTCTGCCCAAACCCGGTTTTCACGAAGCTATTTGGAAATGGAAACCCTACCCAAAACCCTGTTAATACTCTCAATCCCTGTCTTCCTCGCTTTCCGCCCACCTTCCTCTCCAGTATGGCTGCCGTGGCTAGGCCTCTTGTCACCGTGCAAGCCCTTGAGGGCGATATGGCCACCGATGTACCCCCAACAGTTCCACTTCCGGATGTAATGAAGGCATCGATTCGACCCGACATCGTCACCTTCGTTCACTCCAACATTTCCAAGAACAGCCGGCAACCTTATGCCGTCAGCAAGCGCGCTGGCCACCAGACCTCCGCCGAGTCTTGGGGTACCGGCCGTGCTGTCTCCCGTATCCCTCGTGTTCCCGGTGGTGGAACCCATCGCGCGGGGCAAGGTGCTTTCGGCAACATGTGCCGTGGTGGACGCATGTTCGCTCCTACCAAGACTTGGCGCCGCTGGCACCGTAGAGTTAATATGACTCAGAAGCGTCACGCCGTCGTTTCGGCCATTGCTGCTTCGGCAGTTCCTTCCCTTGTTATGGCTCGCGGTCACCGGATCGAGTCCGTGCCGGAGATGCCTCTGGTCGTGAGTGATTCAGCTGAGGGTGTTGAGAAAACGAAGGACGCCATCAAAGTTTTGAGGCAGGTCGGTGCTTTTCCTGATGCTGAGAAGGCAAAGGATAGCCATTCTATTCGCCCGGGTAAGGGTAAGATGAGAAATCGCCGATATATTTCTCGCAAAGGTCCTCTTATTGTGTATGGAACTGAAGGAGCTAAAGCGGTTAAGGCATTTAGGAACATACCTGGTGTTGAGGTCGCTAATGTGGAGAGGTTGAATCTGCTGAAGCTTGCTCCTGGTGGTCATCTTGGGAGGTTCGTCATTTGGACCAAGTCGGCTTTTGAGAAGCTGGATTCTGTCTATGGATCGTTCGATAAGCCATCACAAAAGAAGAAGGGTTACTTGCTGCCGAGGTCCAAGATGGTCAATTCAGATTTAGCAAGGATTATCAACTCCGATGAAATTCAATCTGTCGTAAGGCCGATCAAGAAGGATTTCAAGAGGGCTCCACTGAAGAAGAACCCACTCAAGAACTTGAATGCTATGTTGAAGTTGAATCCTTATGCCAAGACGGCTAAGAGGATGGCTCTTCTTGCTGAAGCTCAGCGAGTGAAAGCAAAGAAGGAGAAACTCGATAACAAGAGGAAGTCTGTCCCTAAGGAGGAGGCTTCTGCGATCAAGGCTGCTGGAAAAGCATGGTACCATACCATGATCTCTGACAGTGATTACACCGAATTTGAGAACTTTTCAAAATGGTTGGGTGTTTCCCAGTAA 1359 0.5121 MDGPICSPNFCPNPVFTKLFGNGNPTQNPVNTLNPCLPRFPPTFLSSMAAVARPLVTVQALEGDMATDVPPTVPLPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRRVNMTQKRHAVVSAIAASAVPSLVMARGHRIESVPEMPLVVSDSAEGVEKTKDAIKVLRQVGAFPDAEKAKDSHSIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSVYGSFDKPSQKKKGYLLPRSKMVNSDLARIINSDEIQSVVRPIKKDFKRAPLKKNPLKNLNAMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDNKRKSVPKEEASAIKAAGKAWYHTMISDSDYTEFENFSKWLGVSQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4212g00019 452 SUPERFAMILY Ribosomal protein L4 60 314 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pral4212g00019 452 Pfam 60S ribosomal protein L4 C-terminal domain 327 399 IPR025755 -
Pral4212g00019 452 Pfam Ribosomal protein L4/L1 family 73 313 IPR002136 GO:0003735|GO:0005840|GO:0006412
Pral4212g00019 452 MobiDBLite consensus disorder prediction 101 142 - -
Pral4212g00019 452 Coils Coil 389 409 - -
Pral4212g00019 452 PANTHER 60S RIBOSOMAL PROTEIN L4 52 445 IPR045240 -
Pral4212g00019 452 MobiDBLite consensus disorder prediction 101 120 - -
Pral4212g00019 452 FunFam 60S ribosomal protein L4 50 355 - -
Pral4212g00019 452 ProSitePatterns Ribosomal protein L1e signature. 167 193 IPR013000 -
Pral4212g00019 452 Gene3D - 50 355 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4212g00019 Pral-Chr4212 114460 116705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4212g00019 49 452 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.416 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4212g00019 K02930 - gmx:100779764 739.954