LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4212g00007	ATGGATGCCAAGGACATCCTTGGTTTGCCCAAAACCTCCTTGCCAATTCAAGAGAAAAAGTCTAGGCCCCAAAAAGATTCACAGAGAAAACCAGATGGCATTTCACGGGAGGTATATGCACTCACTGGTGGTTTGGCGCCTCTTATGCCTGCAATTGATTCGTCTCAATTAAAGAAAAGGCCTCCATCTGACGAGAAGATCACTTGGCAGTGGCTTCCTTTCGCCAATTCTGCTCGTAAAGATAATCTTCAACTATACCATTGGGTCCGAGTTGTGAATGGTCTTCCACCCACTGGGGACTATTCTTTTGCCAAGTATAACAAGTCTGTAGACATTATCAAATACACAGATGAGGAGTATGAGAAGTATCTGACGAATCCAATGTGGACCAAGGAGGAGACGGATCAACTCTTTGACTTGTGCGAGAGGTTTGATCTTCGGTTCATTGTGATAGCTGACAGGTTCCCATCATCACGAACTGTAGAGGAATTGAAAGACCGATACTACAGTGTATCTCGGACTCTGTTAATTGCTAGGGCTCAATCTTCCGGGGATGTTGCAATGCATCCTTTAGTTAAGGAACCATACAATGTTTCACAAGAGGTTGAGCGGAAACGAGCACTGTCTATGTACCTCTCTCAAACAAAGCAACAAGAGCGAAAAGATCAAGAGGTTCTTGCTGAGGCAAAAAGAATAACTGAATCACGCATGCCTGCTAAGGTTGCTGAAGAGTCTGAGGCTGCTGCTGCATCAAATGCTGGTGCGGAAGAGAGAGCTGTCTCCGGTGATCCTCCATCAAGTGTTCAGCTTCCATCAACGGTTGTTCCATCCACAACAGCAGATAATGCAGCCACTCTTGCTTCCCTTCGCATGCTTCGTGTGTATCTAAGAACATATGCACTTGAGCAAATGGTCCAAGCTGCAAGCTCATCTGCTGGACTACGGACCATCAAACGGGTGGAACAAACACTACAAGAACTTGGGGTTAATTTAAAACCAAGGGTTCCAACCAAAGCTGTTTGTGCAGAACATCTTGAATTAAGAAAAGAAATACTAACTCTGCTCAATCTTCAGAAGCAGCTGCAGTATAAGGAGGCAGAAGGTCGTGATGGTTCATACACTGAAACACCTGGCACACCGAAGGATAGGACATTTATTCCAGATTCTATGAGTTTTGGAGGTGAGAGGATTGGTAAGAGGGACCAGAAACGCAAGGCGCCTGGGAGGATATCAGAAGCTCCATCATCACCGGCTCAGTCTAAAAGGCCTAGAAAACTGAAGGCATCTGATCTATAG	1296	0.4537	MDAKDILGLPKTSLPIQEKKSRPQKDSQRKPDGISREVYALTGGLAPLMPAIDSSQLKKRPPSDEKITWQWLPFANSARKDNLQLYHWVRVVNGLPPTGDYSFAKYNKSVDIIKYTDEEYEKYLTNPMWTKEETDQLFDLCERFDLRFIVIADRFPSSRTVEELKDRYYSVSRTLLIARAQSSGDVAMHPLVKEPYNVSQEVERKRALSMYLSQTKQQERKDQEVLAEAKRITESRMPAKVAEESEAAAASNAGAEERAVSGDPPSSVQLPSTVVPSTTADNAATLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQTLQELGVNLKPRVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGRDGSYTETPGTPKDRTFIPDSMSFGGERIGKRDQKRKAPGRISEAPSSPAQSKRPRKLKASDL	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4212g00007	431	CDD	SANT_DMAP1_like	129	171	-	-
	Pral4212g00007	431	SMART	sant	125	174	IPR001005	-
	Pral4212g00007	431	SUPERFAMILY	Homeodomain-like	125	176	IPR009057	-
	Pral4212g00007	431	MobiDBLite	consensus disorder prediction	236	274	-	-
	Pral4212g00007	431	PANTHER	DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER	1	414	IPR027109	GO:0006281\|GO:0006338\|GO:0035267\|GO:0043967\|GO:0043968
	Pral4212g00007	431	MobiDBLite	consensus disorder prediction	365	431	-	-
	Pral4212g00007	431	Pfam	SANT/Myb-like domain of DAMP1	101	175	IPR032563	-
	Pral4212g00007	431	MobiDBLite	consensus disorder prediction	1	36	-	-
	Pral4212g00007	431	FunFam	DNA methyltransferase 1-associated protein 1	97	184	-	-
	Pral4212g00007	431	MobiDBLite	consensus disorder prediction	394	408	-	-
	Pral4212g00007	431	Gene3D	-	98	185	-	-
	Pral4212g00007	431	MobiDBLite	consensus disorder prediction	18	33	-	-
	Pral4212g00007	431	Pfam	DNA methyltransferase 1-associated protein 1 (DMAP1)	309	366	IPR008468	GO:0005634\|GO:0045892

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4212g00007	Pral-Chr4212	26080	31772	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Pral4212g00007		DMAP1	1.1e-05	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4212g00007	K11324		-	cave:132170322	709.523