Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4211g00004 ATGGAAGAAGAAGGTCGAGGAGTGATGAAACATGTGTGTAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCTTTAGGAGGTCACATGAGGTCACACATCACCAATGTTTCAGCTGAAGCAGAGGAGAAACTCGCGACGACGAAGAAGATTCAATCTGTCATCAATGACGGAGCTGGAAGCAGTAAGGTTGGAGAGTACGATCTCAGAGAGAATCCCAAAAAGACTTGGAGATTCGCTGATTCAAGAAGCGGGGAAGCACCACTAGTCACTGAGGACAAATTCTGCAAAGAGTGTGGTAAAGCGTTTCCCTCTTGGAAAGCTCTTTTTGGTCACATGAAATGCCATTCTGAGAAAGCTTCCATTAACAACAATAACAACTTGGAGAATCAAGCTTCTGCTAGCCAGAAAGTCGTCACAGACAGCCAATCAGACAACGAAGGCACTGGCAATCCGCACCGAAGAAGAAGATCCAAGAGAAGAACGAGGTTCGTGACCACTGCTTCCACTTCGTCTCTGTCTTTTGCAAATCCTTCGTCCTCTGTTTCTGAGGCTGAACAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTAAGTAGGGACGTGGGTCATTGGGGTGGTTTGAATTCTGTTGTTGAGTCCTCTGATAACAATTCTGCATATTTCGAAGCTCGGTCTTATGTGGTTCGAACTAATCTCAGTAGCAAAATTGAAGCGGGCAAAGTAAAACTGACTATTGGCAGTAACTCTGAATCTGCGAACTTGAACTCGAAAGGGAAGAAACCAGAGAGTTTAGCAACTGGGTCTGCGTTGAATGGGTTCAAAGCGATCAAAGCAACAGTTTCCATTAATGGGTTGGTCAAGAATTGTAAAGAAAAGAAGCATGAGCTTGATAACCAGTCGACATTGGAGGATTCTGAAGACGAACTGTGGAAGAGCGAGGTCAATGGAACAGAACTAGATTCAGCAGTAAAGAGGAGGTTCTCAGATTCTGAGATGAAGTCAAATTGCAAGAAAGGGAAGTTCAAGTGTACTACTTGCAACAAGATCTTCCCTTCGTACCAAGCTCTGGGGGGCCACAGATCTAGTCATAAGAAGCTGAAAGGCTGCTCTGCTTCAAGAAACGAGAGCAGCGAAAACAGCATAGAAACAGACCTCAACAATGGGTATGTCATCGAAAAGCAAGAACTTATTGGCTCTGTTAATTTTGAGAATGAGGAAGAGATAATTACAGAACCCAAGAAGAACAAAGTACACGAGTGTCCAATTTGCCTCAAGGTTTTTCCATCCGGCCAAGCTTTGGGTGGTCACAAAAGATCTCATTTCGCAGCTGAAGGGTCACTAGTACTTGAGAAACCAGTTCAGGAAATCAGAGACTTTCTTGATCTTAATCTTCCAGCTTCTGCAGAAGAAGAAAGCAACAGTCAAGTGGAGAATTACCCCCCATGGTGGGTGGTACAAGGCCATCATCATCATCACCACCCCAAGCAAGAAGCACTGGTTGGCCTCCTATCTAACTGA 1524 0.4469 MEEEGRGVMKHVCKFCSKSFPCGRSLGGHMRSHITNVSAEAEEKLATTKKIQSVINDGAGSSKVGEYDLRENPKKTWRFADSRSGEAPLVTEDKFCKECGKAFPSWKALFGHMKCHSEKASINNNNNLENQASASQKVVTDSQSDNEGTGNPHRRRRSKRRTRFVTTASTSSLSFANPSSSVSEAEQEQEEVAMSLMMLSRDVGHWGGLNSVVESSDNNSAYFEARSYVVRTNLSSKIEAGKVKLTIGSNSESANLNSKGKKPESLATGSALNGFKAIKATVSINGLVKNCKEKKHELDNQSTLEDSEDELWKSEVNGTELDSAVKRRFSDSEMKSNCKKGKFKCTTCNKIFPSYQALGGHRSSHKKLKGCSASRNESSENSIETDLNNGYVIEKQELIGSVNFENEEEIITEPKKNKVHECPICLKVFPSGQALGGHKRSHFAAEGSLVLEKPVQEIRDFLDLNLPASAEEESNSQVENYPPWWVVQGHHHHHHPKQEALVGLLSN 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4211g00004 507 SUPERFAMILY beta-beta-alpha zinc fingers 343 442 IPR036236 -
Pral4211g00004 507 MobiDBLite consensus disorder prediction 132 189 - -
Pral4211g00004 507 Gene3D Classic Zinc Finger 8 116 - -
Pral4211g00004 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 420 447 IPR013087 -
Pral4211g00004 507 MobiDBLite consensus disorder prediction 132 147 - -
Pral4211g00004 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Pral4211g00004 507 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Pral4211g00004 507 ProSitePatterns Zinc finger C2H2 type domain signature. 422 442 IPR013087 -
Pral4211g00004 507 SMART c2h2final6 343 365 IPR013087 -
Pral4211g00004 507 SMART c2h2final6 94 116 IPR013087 -
Pral4211g00004 507 SMART c2h2final6 11 33 IPR013087 -
Pral4211g00004 507 SMART c2h2final6 420 442 IPR013087 -
Pral4211g00004 507 Pfam C2H2-type zinc finger 11 33 - -
Pral4211g00004 507 Pfam C2H2-type zinc finger 96 118 - -
Pral4211g00004 507 Pfam C2H2-type zinc finger 343 367 - -
Pral4211g00004 507 Pfam C2H2-type zinc finger 419 442 - -
Pral4211g00004 507 ProSitePatterns Zinc finger C2H2 type domain signature. 345 365 IPR013087 -
Pral4211g00004 507 Gene3D Classic Zinc Finger 340 442 - -
Pral4211g00004 507 SUPERFAMILY beta-beta-alpha zinc fingers 11 116 IPR036236 -
Pral4211g00004 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 33 IPR013087 -
Pral4211g00004 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 343 370 IPR013087 -
Pral4211g00004 507 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 485 - -
Pral4211g00004 507 MobiDBLite consensus disorder prediction 164 188 - -
Pral4211g00004 507 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4211g00004 Pral-Chr4211 15954 18192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4211g00004 10 472 C2H2 Transcription Factor Family AT1G26610 36.566 9.13e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4211g00004 zf-C2H2_6 2.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4211g00004 - - gmx:102669916 483.796