Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4211g00003 ATGCACCCTCCGCCGTATTCTCCCCTCTTCCCTCAGCAGCCCACTGCTTCGGAATCGTTATTCTCGACGTTTCCCTTCGTGCATTCGGATTCGCCTCTTCATTCTCATGGATCCGACCCGCTAGGAAGTTCGGCCTTATACGCGTTGTTTCGCTCTTCTTATGGGCGCCAATCAATTAGTTCCCCGGACACGAACGCTGATACTCAGAACTGGATCGTCAAGCAAGTTCGCTCCATGAGATACGAAGCTGCTGCCAAAGCTTCTCATGGGACTTCGGCTGTGTCCGCAAGTTTTTCTTCTGCGTGGAATGACATCTGGGTGCGTCAACTTTTGCCTAGTCTTACCCCATTAACGTTGCCTATGCCAAACCAAACCAAAGCTAATGAACCAATGCAATGTGAGGTTTGCAAAATTGATTGCACAAACAAAGATGTTTTTGAAAAGCTCGTAACAGAAGAGAAGCACAGGAAGAATATGCAATTGCTAAATAGCCCCACCAATACAGCGATACCAGGAGCCTCTCATGCAAGTTTACAAAGTCAAATAAATAGGGTCCAAGGACAAGATTTATTTGGTGTGGTGAGCAAAGAGTTAGAGTCTAAGAAACAGAAGCTTGTGAGTGGCGGTGCAGCAGTTGATTCAGTAAGGGTTTGCACGATATGTAACGTCGCCTGCAATAGTCAAGATGTGTATAACAAACACCTATCTGGGAAAAAGCATGCTGCTCAGATTAGCTTGATGTCTGATAATGGTATTGGTTCTCATCTTGCCGCGTTTAAGCATCTTGGCATTGGTCCTTGGAAAAAAGGCCCAAAGAAAATTTCTACCCAACCTGCATGGTGCGAACTTTGCAAGATCAGTTGCAACAGCAGGGATGTATATATGACACACTTAGCTGGGAGGAAACACCTGAGGAACCTGGGGTTGCTCTCAAAATCAAATAATGCTTTGCAGCGCGCAACCAATCCAGTTGTTAGGCCCCAGGAAAGGCCAAACACTTGTGAAGATGAAGGGATAGATTCACAGAAGCCAAATAAAGCAGCCATGGTTGAGGATATTGAAGCAAAGAAACGTAAACTTATAAAAGGTGGGGCAGCAGAAACTGACATTAGAATATGCACTCTATGTAATGTGGTGTGCAACAGCCAAACGGTGTTCAATTTTCACCTTGCTGGGCAGAAGCATGCTGTAATGGTGAAGCTGATGATGCAGAAGCAGCCAGGATTGCTTGCAGAAATGTCAAATAATTTCAGAAGTGACACCGATACTTCTTTTAACGCGGAGGAACTCTTGAAAATTAAAACAAGATGTAGAGAGCTTAGAAAAGAGAAGGACATGATAAATTGTTCACAATCCCAAATTTTTGAGCTACTCCGGATAATAGAACTACATGAGAAGTCATTATTAGAGACTAGCATAAAAGATAAGACACACATACAGAGGTTGGAAGAAGAGCTATTGAACTGCTCTCAGGAAATAGATTACCTTAAGGATCAGCTTAATGGAAGGAACATGGAGGTCAAATACCTGCAAGAGCTTGTTTACAGCTTTAAACTGAAATAA 1563 0.4351 MHPPPYSPLFPQQPTASESLFSTFPFVHSDSPLHSHGSDPLGSSALYALFRSSYGRQSISSPDTNADTQNWIVKQVRSMRYEAAAKASHGTSAVSASFSSAWNDIWVRQLLPSLTPLTLPMPNQTKANEPMQCEVCKIDCTNKDVFEKLVTEEKHRKNMQLLNSPTNTAIPGASHASLQSQINRVQGQDLFGVVSKELESKKQKLVSGGAAVDSVRVCTICNVACNSQDVYNKHLSGKKHAAQISLMSDNGIGSHLAAFKHLGIGPWKKGPKKISTQPAWCELCKISCNSRDVYMTHLAGRKHLRNLGLLSKSNNALQRATNPVVRPQERPNTCEDEGIDSQKPNKAAMVEDIEAKKRKLIKGGAAETDIRICTLCNVVCNSQTVFNFHLAGQKHAVMVKLMMQKQPGLLAEMSNNFRSDTDTSFNAEELLKIKTRCRELRKEKDMINCSQSQIFELLRIIELHEKSLLETSIKDKTHIQRLEEELLNCSQEIDYLKDQLNGRNMEVKYLQELVYSFKLK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4211g00003 520 PANTHER ZINC FINGER PROTEIN 385B-LIKE 269 418 - -
Pral4211g00003 520 Coils Coil 479 499 - -
Pral4211g00003 520 SMART ZnF_U1_5 368 402 IPR003604 GO:0003676|GO:0008270
Pral4211g00003 520 SMART ZnF_U1_5 213 247 IPR003604 GO:0003676|GO:0008270
Pral4211g00003 520 SMART ZnF_U1_5 128 162 IPR003604 GO:0003676|GO:0008270
Pral4211g00003 520 SMART ZnF_U1_5 276 310 IPR003604 GO:0003676|GO:0008270
Pral4211g00003 520 SUPERFAMILY beta-beta-alpha zinc fingers 369 405 IPR036236 -
Pral4211g00003 520 Pfam Zinc-finger of C2H2 type 218 240 - -
Pral4211g00003 520 Pfam Zinc-finger of C2H2 type 373 395 - -
Pral4211g00003 520 Pfam Zinc-finger of C2H2 type 280 303 - -
Pral4211g00003 520 SUPERFAMILY beta-beta-alpha zinc fingers 267 308 IPR036236 -
Pral4211g00003 520 Gene3D Classic Zinc Finger 193 246 - -
Pral4211g00003 520 Gene3D Classic Zinc Finger 268 309 - -
Pral4211g00003 520 Gene3D Classic Zinc Finger 353 404 - -
Pral4211g00003 520 SUPERFAMILY beta-beta-alpha zinc fingers 211 246 IPR036236 -
Pral4211g00003 520 SMART c2h2final6 371 395 IPR013087 -
Pral4211g00003 520 SMART c2h2final6 216 240 IPR013087 -
Pral4211g00003 520 SMART c2h2final6 279 303 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4211g00003 Pral-Chr4211 6052 11898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4211g00003 195 422 C2H2 Transcription Factor Family AT5G61190 25.214 2.50e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4211g00003 - - aprc:113848135 387.497