Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4210g00083 ATGAAGAAGGAAACCTCGCGTGACGTTTACCAGTCTCGAGTCATTCGGCGCCCAAAAAACTTGAAACTCGCGAGGCAAACCAGAGTTTTGACACTGTACCCTGTGCGGTCTTTCCCTCGGGATGCCATGGTACTCACAGAAGAACAGAGAAAACAAGCTGAAGCGAACCGGTTAGCGGCCATTGAAAGACGAAAGGCAGTGTTAGAAGCTCGGGGAGAGAAAGACCCTTGGCAGCTCTTCAAGTGCCGTAAGATTTCTTCCGAATCCATTGCCAAGCCCCCGCCCATCGGTCAGCTCCCCCGGCAACCCCATTCGGTCCCCGTCGAGCCTGTTTCTGCCGGTCCTTTACCCCGTAAATTTTTGGTTAGGCTCGAAATATGCTCTCCCGACTCTTTCTCTGCAACTCCTCTTCCCCTTCGGAGTTCCCCCTATCCCGGAGAAGAATGGTGCTTACAGAGACTAAGTGATCATTTGTCCCATGTCATGCCTTCACACTACACCCAGAATCATGATGGCAGAAACTCCTGTGTGTATAACTTGAGGGATTACCATGCTGTCCTTAAATATCTGAAGATTGTCAAGGACATAGAAGTTGAAGAAATTCCGCGGGGAACTTTGAAAGTCGTTGAAGCATTTTCACATTTCTCCGGTACGGATCGCTGGATACCCTGCAGGCCCGAGCATTTGTCTGATGACAAGGTTGACGAGTTAATTGGGAAGCTACCAACGGGTCTGTTGGATGCACTGTTGCCTTTCCAAAGGGATGGTTTAAGATTTGGATTGAGAAGGGGTGGCCGCTGTCTTATTGCAGATGAGATGGGCCTTGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGAATGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAACTAGAGCGGTGGCTTCCCTTTTGTACGCCTGCTGATATCCATCTAGTCTTTGGTCATCGGGATAATCCTGCTTATTTAACTAGATGCCCTAGAATTGTGGTTATTTCTTATACTATGCTCCATCGTTTGAGGAAGAGCATGCTTGGGCGAGAATGGGCTCTCTTGATTGTTGATGAATCTCATCATGTGCGATGCACAAGGAAGACCTCAGAACCAGGGGAGATAAAGGCTGTTCTTGATGTAGCTTCAAAAGTCAATCGCATAATACTGCTGTCTGGGACACCCTCTTTGTCAAGGCCATATGACATATTTCATCAGATAAACATGTTATGGCCTGGACTGCTGGGCAAGGATAAATATGCATTTGCTAAAACTTATTGTGATTGTAAATATATCAAGGGAACCCATGGCAAAATTTATGCGGATTTTTCAAAGGGCATTCGCTTGGAAGAGTTGAATGTGTTACTCAAGCAAACTGTTATGATAAGGCGCCTGAAGGAGCATGTGTTGCTACAATTGCCACCAAAACGGCGGCAAATTATAAGGCTGTTGTTGAAGAGATCAGATTTAGTTGCTGCAAAAACAGCAGTTGGAAAGTTGACTGGCAATACTTCCAAAAGTGACACTGTAGACATGACTTTGGACAGTTCTGATGAACATGATGGGATGTTGACGAGATCAAATGTAGTTGCCTCAGAAACTGCAGTTGGGCTGTCAAATATTGATGCTTCTGAAAGTGTTGATGAAGACGTAACTTTGGAAACTTTGGATGAATCTGAAGGGAAGCTTTCCTACCAGGAACTTGGAATTGCCAAGCTTTCTGGATTTCGTGAATGGCTTTCACTCCATTCTGTTGTTGCCGAGACAGAAAGTGCTTCGAAAATGATAATTTTTGCTCATCACCATAAAGTTCTTGATGGGTTGCAGGAGTTTGTGTGTGAGAAAGGGATTAGTTTTGTCCGAATTGATGGAAGCACACTTGCCAGGGATAGGCAGTCAGCGGTGGTGTCATTTCGTTCAAAACCAGAGGTTAAAATTGCAATAATAGGTATTTTAGCAGCAGGATTTGGACTTGATTTCTCAACAGCACAAGATGTTGTGTTCTTGGAACTTCCTCAGTGCCCGACCTTGATGCTTCAGGCTGAGGATAGAGCTCATCGACGAGGGCAAACAAATGCAGTCAATGTATATATCTTTTGTGCAAAGGATACTTGGGATGAGTCACATTGGAAAAATCTGAACAAAAGTTTGTACCGTATTTCATCTACAACAGATGGTAAATATGATGGGATGAAAGAGATACAGGTTGAAGGTGTTTCTTACCTGGACACATTCTTCAAAACCAATAGAATCCATGAAGAGCAAGCTGCACCTGGTGAAGCTTCTGAACAGGCGACCAACCTGCTGGATATTTCCCTGGTTTCAAATTTGCTACCTTCCCAAGCAGATTCTAAGGAATCAGAGGCAAAATTGGGTGATCAAGCTGATCAGCAGACTTGCTTTGCTGACAAGGTTTCCTTCCCAGAATCAGGCGAGGCTTCTACTTTGGATGTAGATTTAGTTGTAGGTGTTTTTGACACCAACAAAAAATGCTCTGGTTTTGACATGAGTAAGCTGGATGAAACTTATGGAAGCAAAGGTCAGATGATAGAATTTATTCCAAAGAACAGTGGTGAAGATGATAATCAAGTGGAGGAGATCCAGAATAAAAGAACATCAACAATAAAAGCAGATGACTCCCAACCTGTCCATCCAATTGAAGCTGAAGAAAGTTCCTCTCCTCACATGGAATCTCTACGATTTGAGGTCAGCCCATACACTGGAAGGATCCACTTGTATACTTGCGTTTTGGGTGCAGATACAAGACCAAAACCGCTTTGTAAAAATTTCCGACCAGAGGAACTTGAGTTGCTCAGTTCGCTTTCTGACGGTGATAAAAAGAAAAAAGAGATATCTATGGGAGATAGTCTTGCTTTTACAACTGCTCTTTTGGGATTTTTAAATGAATGGAAGAAATTAAGGCCAATTGAGCGAAAAAAGTTACTGGGAAAGCCATTACAACTTCCCTTGGCTGTTGAATTGTGCTACTTAAGTGAAACTAGTAGCCACAACAATAAGGGATTACTAAATGGTGGAAGCAAGCGGCGCATGACTCCTTTAATGGAGATAAGCCATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTCTGCCTGCGGCGTGGCAATGGCAAGAAGGAGAAAGAATACACTCAAGGTTGGACTCAGACAGATGAGCCACTCTGTAAACTTTGTCAAAAGACATGCATGGGTAACAATGCCATGTCACCTGAATATTTTGAAGATCTCTTCTGTAACCTAGTCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAAATTCCTTCGTCAGGAACTTTTTGAAGTTGAACGTGGGGTGTGCTCAAATTGCCATTTAGACTGTCATAAACTAGTTGAACATATTAGACCTTTACCGCTAGCAAGGCGAAGAGAGTACATTGAGAAAGTGGCACCAAATGTGGCTAAGCGAAAGAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCGTGGCATGCTGATCATATTGTCCCAGTATATCAAGGCGGAGGTGAATGTCGACTGGAGAATATGAGGACCCTTTGCGTGGCCTGCCATTATGATGTTACAACAGCACAGTGTACCGAACGACGCAAAGAGAGAGCCAAGGCCAAGAAACAGCTAAAATTGGTGATGGGTGAGTTAAAAGCAGGTCAAACGAAGGTCGCCACAGGTTCTGATATTAAGGAACAGGGTCTTCTTGAGGTACAAGAGGATAGAAGTGAGGATGAGCTCATTGTCAAGGTGCCTGGAAGTGCTTATTCAATAGCTAATGGCTAA 3831 0.4388 MKKETSRDVYQSRVIRRPKNLKLARQTRVLTLYPVRSFPRDAMVLTEEQRKQAEANRLAAIERRKAVLEARGEKDPWQLFKCRKISSESIAKPPPIGQLPRQPHSVPVEPVSAGPLPRKFLVRLEICSPDSFSATPLPLRSSPYPGEEWCLQRLSDHLSHVMPSHYTQNHDGRNSCVYNLRDYHAVLKYLKIVKDIEVEEIPRGTLKVVEAFSHFSGTDRWIPCRPEHLSDDKVDELIGKLPTGLLDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPFCTPADIHLVFGHRDNPAYLTRCPRIVVISYTMLHRLRKSMLGREWALLIVDESHHVRCTRKTSEPGEIKAVLDVASKVNRIILLSGTPSLSRPYDIFHQINMLWPGLLGKDKYAFAKTYCDCKYIKGTHGKIYADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDLVAAKTAVGKLTGNTSKSDTVDMTLDSSDEHDGMLTRSNVVASETAVGLSNIDASESVDEDVTLETLDESEGKLSYQELGIAKLSGFREWLSLHSVVAETESASKMIIFAHHHKVLDGLQEFVCEKGISFVRIDGSTLARDRQSAVVSFRSKPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTWDESHWKNLNKSLYRISSTTDGKYDGMKEIQVEGVSYLDTFFKTNRIHEEQAAPGEASEQATNLLDISLVSNLLPSQADSKESEAKLGDQADQQTCFADKVSFPESGEASTLDVDLVVGVFDTNKKCSGFDMSKLDETYGSKGQMIEFIPKNSGEDDNQVEEIQNKRTSTIKADDSQPVHPIEAEESSSPHMESLRFEVSPYTGRIHLYTCVLGADTRPKPLCKNFRPEELELLSSLSDGDKKKKEISMGDSLAFTTALLGFLNEWKKLRPIERKKLLGKPLQLPLAVELCYLSETSSHNNKGLLNGGSKRRMTPLMEISHPLPSDAVWRKVCLRRGNGKKEKEYTQGWTQTDEPLCKLCQKTCMGNNAMSPEYFEDLFCNLVCYEEYRMRTSNKFLRQELFEVERGVCSNCHLDCHKLVEHIRPLPLARRREYIEKVAPNVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCTERRKERAKAKKQLKLVMGELKAGQTKVATGSDIKEQGLLEVQEDRSEDELIVKVPGSAYSIANG 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4210g00083 1276 SMART helicmild6 615 698 IPR001650 -
Pral4210g00083 1276 FunFam SNF2 DNA repair protein, putative 223 472 - -
Pral4210g00083 1276 Gene3D - 483 781 IPR027417 -
Pral4210g00083 1276 SMART ultradead3 245 429 IPR014001 -
Pral4210g00083 1276 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 590 744 IPR001650 -
Pral4210g00083 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 750 IPR027417 -
Pral4210g00083 1276 CDD DEXHc_HARP_SMARCAL1 249 473 - -
Pral4210g00083 1276 CDD SF2_C_SNF 580 709 - -
Pral4210g00083 1276 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 47 1224 - -
Pral4210g00083 1276 Gene3D - 228 469 IPR038718 -
Pral4210g00083 1276 Pfam SNF2-related domain 267 517 IPR000330 GO:0005524|GO:0140658
Pral4210g00083 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 473 IPR027417 -
Pral4210g00083 1276 MobiDBLite consensus disorder prediction 880 906 - -
Pral4210g00083 1276 Gene3D - 1098 1230 - -
Pral4210g00083 1276 Coils Coil 51 71 - -
Pral4210g00083 1276 CDD HNHc 1167 1207 IPR003615 -
Pral4210g00083 1276 MobiDBLite consensus disorder prediction 891 905 - -
Pral4210g00083 1276 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 258 422 IPR014001 -
Pral4210g00083 1276 Pfam Helicase conserved C-terminal domain 595 698 IPR001650 -
Pral4210g00083 1276 Pfam HNH endonuclease 1173 1204 IPR002711 GO:0003676|GO:0004519|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4210g00083 Pral-Chr4210 431336 444550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4210g00083 600 751 RAD5 or RAD16-like Gene Family AT1G11100 34.416 8.38e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4210g00083 SNF2_N 9.4e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4210g00083 K25861 - pcin:129320183 2057.72