Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4210g00082 ATGAAGAAGAAGGAAACCTCGCGTGACGTTTACCAGTCTCGAGTCATTCGGCGCCCAAAAAACTTGAAACTCGCGAGGCAAACCAGAGTTTTGACACTGTACCCTGTGCGGTCTTTCCCTCGGGATGCCATGGTACTCACAGAAGAACAGAGAAAACAAGCTGAAGCGAACCGGTTAGCGGCCATTGAAAGACGAAAGGCAGTGTTAGAAGCTCGGGGAGAGAAAGACCCTTGGCAGCTCTTCAAGTGCCGTAAGATTTCTTCCGAATCCATTGCCAAGCCCCCGCCCATCGGTCAGCTCCCCCGGCAACCCCATTCGGTCCCCGTCGAGCCTGTTTCTGCCGGTCCTTTACCCCGTAAATTTTTGGTTAGGCTCGAAATATGCTCTCCCGACTCTTTCTCTGCAACTCCTCTTCCCCTTCGGAGTTCCCCCTATCCCGGAGAAGAATGGTGCTTACAGAGACTAAGTGATCATTTGTCCCATGTCATGCCTTCACACTACACCCAGAATCATGATGGCAGAAACTCCTGTGTGTATAACTTGAGGGATTACCATGCTGTCCTTAAATATCTGAAGATTGTCAAGGACATAGAAGTTGAAGAAATTCCGCGGGGAACTTTGAAAGTCGTTGAAGCATTTTCACATTTCTCCGGTACGGATCGCTGGATACCCTGCAGGCCCGAGCATTTGTCTGATGACAAGGTTGACGAGTTAATTGGGAAGCTACCAACGGGTCTGTTGGATGCACTGTTGCCTTTCCAAAGGGATGGTTTAAGATTTGGATTGAGAAGGGGTGGCCGCTGTCTTATTGCAGATGAGATGGGCCTTGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGAATGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAACTAGAGCGGTGGCTTCCCTTTTGTACGCCTGCTGATATCCATCTAGTCTTTGGTCATCGGGATAATCCTGCTTATTTAACTAGATGCCCTAGAATTGTGGTTATTTCTTATACTATGCTCCATCGTTTGAGGAAGAGCATGCTTGGGCGAGAATGGGCTCTCTTGATTGTTGATGAATCTCATCATGTGCGATGCACAAGGAAGACCTCAGAACCAGGGGAGATAAAGGCTGTTCTTGATGTAGCTTCAAAAGTCAATCGCATAATACTGCTGTCTGGGACACCCTCTTTGTCAAGGCCATATGACATATTTCATCAGATAAACATGTTATGGCCTGGACTGCTGGGCAAGGATAAATATGCATTTGCTAAAACTTATTGTGATTGTAAATATATCAAGGGAACCCATGGCAAAATTTATGCGGATTTTTCAAAGGGCATTCGCTTGGAAGAGTTGAATGTGTTACTCAAGCAAACTGTTATGATAAGGCGCCTGAAGGAGCATGTGTTGCTACAATTGCCACCAAAACGGCGGCAAATTATAAGGCTGTTGTTGAAGAGATCAGATTTAGTTGCTGCAAAAACAGCAGTTGGAAAGTTGACTGGCAATACTTCCAAAAGTGACACTGTAGACATGACTTTGGACAGTTCTGATGAACATGATGGGATGTTGACGAGATCAAATGTAGTTGCCTCAGAAACTGCAGTTGGGCTGTCAAATATTGATGCTTCTGAAAGTGTTGATGAAGACGTAACTTTGGAAACTTTGGATGAATCTGAAGGGAAGCTTTCCTACCAGGAACTTGGAATTGCCAAGCTTTCTGGATTTCGTGAATGGCTTTCACTCCATTCTGTTGTTGCCGAGACAGAAAGTGCTTCGAAAATGATAATTTTTGCTCATCACCATAAAGTTCTTGATGGGTTGCAGGAGTTTGTGTGTGAGAAAGGGATTAGTTTTGTCCGAATTGATGGAAGCACACTTGCCAGGGATAGGCAGTCAGCGGTGGTGTCATTTCGTTCAAAACCAGAGGTTAAAATTGCAATAATAGGTATTTTAGCAGCAGGATTTGGACTTGATTTCTCAACAGCACAAGATGTTGTGTTCTTGGAACTTCCTCAGTGCCCGACCTTGATGCTTCAGGCTGAGGATAGAGCTCATCGACGAGGGCAAACAAATGCAGTCAATGTATATATCTTTTGTGCAAAGGATACTTGGGATGAGTCACATTGGAAAAATCTGAACAAAAGTTTGTACCGTATTTCATCTACAACAGATGGTAAATATGATGGGATGAAAGAGATACAGGTTGAAGGTGTTTCTTACCTGGACACATTCTTCAAAACCAATAGAATCCATGAAGAGCAAGCTGCACCTGGTGAAGCTTCTGAACAGGCGACCAACCTGCTGGATATTTCCCTGGTTTCAAATTTGCTACCTTCCCAAGCAGATTCTAAGGAATCAGAGGCAAAATTGGGTGATCAAGCTGATCAGCAGACTTGCTTTGCTGACAAGGTTTCCTTCCCAGAATCAGGCGAGGCTTCTACTTTGGATGTAGATTTAGTTGTAGGTGTTTTTGACACCAACAAAAAATGCTCTGGTTTTGACATGAGTAAGCTGGATGAAACTTATGGAAGCAAAGGTCAGATGATAGAATTTATTCCAAAGAACAGTGGTGAAGATGATAATCAAGTGGAGGAGAATAAAAGAACATCAACAATAAAAGCAGATGACTCCCAACCTGTCCATCCAATTGAAGCTGAAGAAAGTTCCTCTCCTCACATGGAATCTCTACGATTTGAGGTCAGCCCATACACTGGAAGGATCCACTTGTATACTTGCGTTTTGGGTGCAGATACAAGACCAAAACCGCTTTGTAAAAATTTCCGACCAGAGGAACTTGAGTTGCTCAGTTCGCTTTCTGACGGTGATAAAAAGAAAAAAGAGATATCTATGGGAGATAGTCTTGCTTTTACAACTGCTCTTTTGGGATTTTTAAATGAATGGAAGAAATTAAGGCCAATTGAGCGAAAAAAGTTACTGGGAAAGCCATTACAACTTCCCTTGGCTGTTGAATTGTGCTACTTAAGTGAAACTAGTAGCCACAACAATAAGGGATTACTAAATGGTGGAAGCAAGCGGCGCATGACTCCTTTAATGGAGATAAGCCATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTCTGCCTGCGGCGTGGCAATGGCAAGAAGGAGAAAGAATACACTCAAGGTTGGACTCAGACAGATGAGCCACTCTGTAAACTTTGTCAAAAGACATGCATGGGTAACAATGCCATGTCACCTGAATATTTTGAAGATCTCTTCTGTAACCTAGTCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAAATTCCTTCGTCAGGAACTTTTTGAAGTTGAACGTGGGGTGTGCTCAAATTGCCATTTAGACTGTCATAAACTAGTTGAACATATTAGACCTTTACCGCTAGCAAGGCGAAGAGAGTACATTGAGAAAGTGGCACCAAATGTGGCTAAGCGAAAGAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCGTGGCATGCTGATCATATTGTCCCAGTATATCAAGGCGGAGGTGAATGTCGACTGGAGAATATGAGGACCCTTTGCGTGGCCTGCCATTATGATGTTACAACAGCACAGTGTACCGAACGACGCAAAGAGAGAGCCAAGGCCAAGAAACAGCTAAAATTGGTGATGGGTGAGTTAAAAGCAGGTCAAACGAAGGTCGCCACAGGTTCTGATATTAAGGAACAGGGTCTTCTTGAGGTACAAGAGGATAGAAGTGAGGATGAGCTCATTGTCAAGGTGCCTGGAAGTGCTTATTCAATAGCTAATGGCTAA 3828 0.4386 MKKKETSRDVYQSRVIRRPKNLKLARQTRVLTLYPVRSFPRDAMVLTEEQRKQAEANRLAAIERRKAVLEARGEKDPWQLFKCRKISSESIAKPPPIGQLPRQPHSVPVEPVSAGPLPRKFLVRLEICSPDSFSATPLPLRSSPYPGEEWCLQRLSDHLSHVMPSHYTQNHDGRNSCVYNLRDYHAVLKYLKIVKDIEVEEIPRGTLKVVEAFSHFSGTDRWIPCRPEHLSDDKVDELIGKLPTGLLDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPFCTPADIHLVFGHRDNPAYLTRCPRIVVISYTMLHRLRKSMLGREWALLIVDESHHVRCTRKTSEPGEIKAVLDVASKVNRIILLSGTPSLSRPYDIFHQINMLWPGLLGKDKYAFAKTYCDCKYIKGTHGKIYADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDLVAAKTAVGKLTGNTSKSDTVDMTLDSSDEHDGMLTRSNVVASETAVGLSNIDASESVDEDVTLETLDESEGKLSYQELGIAKLSGFREWLSLHSVVAETESASKMIIFAHHHKVLDGLQEFVCEKGISFVRIDGSTLARDRQSAVVSFRSKPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTWDESHWKNLNKSLYRISSTTDGKYDGMKEIQVEGVSYLDTFFKTNRIHEEQAAPGEASEQATNLLDISLVSNLLPSQADSKESEAKLGDQADQQTCFADKVSFPESGEASTLDVDLVVGVFDTNKKCSGFDMSKLDETYGSKGQMIEFIPKNSGEDDNQVEENKRTSTIKADDSQPVHPIEAEESSSPHMESLRFEVSPYTGRIHLYTCVLGADTRPKPLCKNFRPEELELLSSLSDGDKKKKEISMGDSLAFTTALLGFLNEWKKLRPIERKKLLGKPLQLPLAVELCYLSETSSHNNKGLLNGGSKRRMTPLMEISHPLPSDAVWRKVCLRRGNGKKEKEYTQGWTQTDEPLCKLCQKTCMGNNAMSPEYFEDLFCNLVCYEEYRMRTSNKFLRQELFEVERGVCSNCHLDCHKLVEHIRPLPLARRREYIEKVAPNVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCTERRKERAKAKKQLKLVMGELKAGQTKVATGSDIKEQGLLEVQEDRSEDELIVKVPGSAYSIANG 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4210g00082 1275 SMART ultradead3 246 430 IPR014001 -
Pral4210g00082 1275 CDD DEXHc_HARP_SMARCAL1 250 474 - -
Pral4210g00082 1275 CDD SF2_C_SNF 581 710 - -
Pral4210g00082 1275 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 259 423 IPR014001 -
Pral4210g00082 1275 SMART helicmild6 616 699 IPR001650 -
Pral4210g00082 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 751 IPR027417 -
Pral4210g00082 1275 Gene3D - 1097 1229 - -
Pral4210g00082 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 474 IPR027417 -
Pral4210g00082 1275 Coils Coil 52 72 - -
Pral4210g00082 1275 Gene3D - 484 782 IPR027417 -
Pral4210g00082 1275 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 591 745 IPR001650 -
Pral4210g00082 1275 MobiDBLite consensus disorder prediction 864 905 - -
Pral4210g00082 1275 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 48 1223 - -
Pral4210g00082 1275 MobiDBLite consensus disorder prediction 868 904 - -
Pral4210g00082 1275 FunFam SNF2 DNA repair protein, putative 224 473 - -
Pral4210g00082 1275 Gene3D - 229 470 IPR038718 -
Pral4210g00082 1275 Pfam HNH endonuclease 1172 1203 IPR002711 GO:0003676|GO:0004519|GO:0008270
Pral4210g00082 1275 Pfam Helicase conserved C-terminal domain 596 699 IPR001650 -
Pral4210g00082 1275 Pfam SNF2-related domain 268 518 IPR000330 GO:0005524|GO:0140658
Pral4210g00082 1275 CDD HNHc 1166 1206 IPR003615 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4210g00082 Pral-Chr4210 431336 444550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4210g00082 601 752 RAD5 or RAD16-like Gene Family AT1G11100 34.416 8.23e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4210g00082 SNF2_N 9.4e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4210g00082 K25861 - pcin:129320183 2062.73