Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4210g00080 ATGAAGAAGAAGGAAACCTCGCGTGACGTTTACCAGTCTCGAGTCATTCGGCGCCCAAAAAACTTGAAACTCGCGAGGCAAACCAGAGTTTTGACACTGTACCCTGTGCGGTCTTTCCCTCGGGATGCCATGGTACTCACAGAAGAACAGAGAAAACAAGCTGAAGCGAACCGGTTAGCGGCCATTGAAAGACGAAAGGCAGTGTTAGAAGCTCGGGGAGAGAAAGACCCTTGGCAGCTCTTCAAGTGCCGTAAGATTTCTTCCGAATCCATTGCCAAGCCCCCGCCCATCGGTCAGCTCCCCCGGCAACCCCATTCGGTCCCCGTCGAGCCTGTTTCTGCCGGTCCTTTACCCCGTAAATTTTTGGTTAGGCTCGAAATATGCTCTCCCGACTCTTTCTCTGCAACTCCTCTTCCCCTTCGGAGTTCCCCCTATCCCGGAGAAGAATGGTGCTTACAGAGACTAAGTGATCATTTGTCCCATGTCATGCCTTCACACTACACCCAGAATCATGATGGCAGAAACTCCTGTGTGTATAACTTGAGGGATTACCATGCTGTCCTTAAATATCTGAAGATTGTCAAGGACATAGAAGTTGAAGAAATTCCGCGGGGAACTTTGAAAGTCGTTGAAGCATTTTCACATTTCTCCGGTACGGATCGCTGGATACCCTGCAGGCCCGAGCATTTGTCTGATGACAAGGTTGACGAGTTAATTGGGAAGCTACCAACGGGTCTGTTGGATGCACTGTTGCCTTTCCAAAGGGATGGTTTAAGATTTGGATTGAGAAGGGGTGGCCGCTGTCTTATTGCAGATGAGATGGGCCTTGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGAATGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAACTAGAGCGGTGGCTTCCCTTTTGTACGCCTGCTGATATCCATCTAGTCTTTGGTCATCGGGATAATCCTGCTTATTTAACTAGATGCCCTAGAATTGTGGTTATTTCTTATACTATGCTCCATCGTTTGAGGAAGAGCATGCTTGGGCGAGAATGGGCTCTCTTGATTGTTGATGAATCTCATCATGTGCGATGCACAAGGAAGACCTCAGAACCAGGGGAGATAAAGGCTGTTCTTGATGTAGCTTCAAAAGTCAATCGCATAATACTGCTGTCTGGGACACCCTCTTTGTCAAGGCCATATGACATATTTCATCAGATAAACATGTTATGGCCTGGACTGCTGGGCAAGGATAAATATGCATTTGCTAAAACTTATTGTGATTGTAAATATATCAAGGGAACCCATGGCAAAATTTATGCGGATTTTTCAAAGGGCATTCGCTTGGAAGAGTTGAATGTGTTACTCAAGCAAACTGTTATGATAAGGCGCCTGAAGGAGCATGTGTTGCTACAATTGCCACCAAAACGGCGGCAAATTATAAGGCTGTTGTTGAAGAGATCAGATTTAGTTGCTGCAAAAACAGCAGTTGGAAAGTTGACTGGCAATACTTCCAAAAGTGACACTGTAGACATGACTTTGGACAGTTCTGATGAACATGATGGGATGTTGACGAGATCAAATGTAGTTGCCTCAGAAACTGCAGTTGGGCTGTCAAATATTGATGCTTCTGAAAGTGTTGATGAAGACGTAACTTTGGAAACTTTGGATGAATCTGAAGGGAAGCTTTCCTACCAGGAACTTGGAATTGCCAAGCTTTCTGGATTTCGTGAATGGCTTTCACTCCATTCTGTTGTTGCCGAGACAGAAAGTGCTTCGAAAATGATAATTTTTGCTCATCACCATAAAGTTCTTGATGGGTTGCAGGAGTTTGTGTGTGAGAAAGGGATTAGTTTTGTCCGAATTGATGGAAGCACACTTGCCAGGGATAGGCAGTCAGCGGTGGTGTCATTTCGTTCAAAACCAGAGGTTAAAATTGCAATAATAGGTATTTTAGCAGCAGGATTTGGACTTGATTTCTCAACAGCACAAGATGTTGTGTTCTTGGAACTTCCTCAGTGCCCGACCTTGATGCTTCAGGCTGAGGATAGAGCTCATCGACGAGGGCAAACAAATGCAGTCAATGTATATATCTTTTGTGCAAAGGATACTTGGGATGAGTCACATTGGAAAAATCTGAACAAAAGTTTGTACCGTATTTCATCTACAACAGATGGTAAATATGATGGGATGAAAGAGATACAGGTTGAAGGTGTTTCTTACCTGGACACATTCTTCAAAACCAATAGAATCCATGAAGAGCAAGCTGCACCTGGTGAAGCTTCTGAACAGGCGACCAACCTGCTGGATATTTCCCTGGTTTCAAATTTGCTACCTTCCCAAGCAGATTCTAAGGAATCAGAGGCAAAATTGGGTGATCAAGCTGATCAGCAGACTTGCTTTGCTGACAAGGTTTCCTTCCCAGAATCAGGCGAGGCTTCTACTTTGGATGTAGATTTAGTTGTAGGTGTTTTTGACACCAACAAAAAATGCTCTGGTTTTGACATGAGTAAGCTGGATGAAACTTATGGAAGCAAAGGTCAGATGATAGAATTTATTCCAAAGAACAGTGGTGAAGATGATAATCAAGTGGAGGAGATCCAGAATAAAAGAACATCAACAATAAAAGCAGATGACTCCCAACCTGTCCATCCAATTGAAGCTGAAGAAAGTTCCTCTCCTCACATGGAATCTCTACGATTTGAGGTCAGCCCATACACTGGAAGGATCCACTTGTATACTTGCGTTTTGGGTGCAGATACAAGACCAAAACCGCTTTGTAAAAATTTCCGACCAGAGGAACTTGAGTTGCTCAGTTCGCTTTCTGACGGTGATAAAAAGAAAAAAGAGATATCTATGGGAGATAGTCTTGCTTTTACAACTGCTCTTTTGGGATTTTTAAATGAATGGAAGAAATTAAGGCCAATTGAGCGAAAAAAGTTACTGGGAAAGCCATTACAACTTCCCTTGGCTGTTGAATTGTGCTACTTAAGTGAAACTAGTAGCCACAACAATAAGGGATTACTAAATGGTGGAAGCAAGCGGCGCATGACTCCTTTAATGGAGATAAGCCATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTCTGCCTGCGGCGTGGCAATGGCAAGAAGGAGAAAGAATACACTCAAGGTTGGACTCAGACAGATGAGCCACTCTGTAAACTTTGTCAAAAGACATGCATGGGTAACAATGCCATGTCACCTGAATATTTTGAAGATCTCTTCTGTAACCTAGTCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAAATTCCTTCGTCAGGAACTTTTTGAAGTTGAACGTGGGGTGTGCTCAAATTGCCATTTAGACTGTCATAAACTAGTTGAACATATTAGACCTTTACCGCTAGCAAGGCGAAGAGAGTACATTGAGAAAGTGGCACCAAATGTGGCTAAGCGAAAGAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCGTGGCATGCTGATCATATTGTCCCAGTATATCAAGGCGGAGGTGAATGTCGACTGGAGAATATGAGGACCCTTTGCGTGGCCTGCCATTATGATGTTACAACAGCACAGTGTACCGAACGACGCAAAGAGAGAGCCAAGGCCAAGAAACAGCTAAAATTGGTGATGGGTGAGTTAAAAGCAGGTCAAACGAAGGTCGCCACAGGTTCTGATATTAAGGAACAGGGTCTTCTTGAGGTACAAGAGGATAGAAGTGAGGATGAGCTCATTGTCAAGGTGCCTGGAAGTGCTTATTCAATAGCTAATGGCTAA 3834 0.4387 MKKKETSRDVYQSRVIRRPKNLKLARQTRVLTLYPVRSFPRDAMVLTEEQRKQAEANRLAAIERRKAVLEARGEKDPWQLFKCRKISSESIAKPPPIGQLPRQPHSVPVEPVSAGPLPRKFLVRLEICSPDSFSATPLPLRSSPYPGEEWCLQRLSDHLSHVMPSHYTQNHDGRNSCVYNLRDYHAVLKYLKIVKDIEVEEIPRGTLKVVEAFSHFSGTDRWIPCRPEHLSDDKVDELIGKLPTGLLDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPFCTPADIHLVFGHRDNPAYLTRCPRIVVISYTMLHRLRKSMLGREWALLIVDESHHVRCTRKTSEPGEIKAVLDVASKVNRIILLSGTPSLSRPYDIFHQINMLWPGLLGKDKYAFAKTYCDCKYIKGTHGKIYADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDLVAAKTAVGKLTGNTSKSDTVDMTLDSSDEHDGMLTRSNVVASETAVGLSNIDASESVDEDVTLETLDESEGKLSYQELGIAKLSGFREWLSLHSVVAETESASKMIIFAHHHKVLDGLQEFVCEKGISFVRIDGSTLARDRQSAVVSFRSKPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTWDESHWKNLNKSLYRISSTTDGKYDGMKEIQVEGVSYLDTFFKTNRIHEEQAAPGEASEQATNLLDISLVSNLLPSQADSKESEAKLGDQADQQTCFADKVSFPESGEASTLDVDLVVGVFDTNKKCSGFDMSKLDETYGSKGQMIEFIPKNSGEDDNQVEEIQNKRTSTIKADDSQPVHPIEAEESSSPHMESLRFEVSPYTGRIHLYTCVLGADTRPKPLCKNFRPEELELLSSLSDGDKKKKEISMGDSLAFTTALLGFLNEWKKLRPIERKKLLGKPLQLPLAVELCYLSETSSHNNKGLLNGGSKRRMTPLMEISHPLPSDAVWRKVCLRRGNGKKEKEYTQGWTQTDEPLCKLCQKTCMGNNAMSPEYFEDLFCNLVCYEEYRMRTSNKFLRQELFEVERGVCSNCHLDCHKLVEHIRPLPLARRREYIEKVAPNVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCTERRKERAKAKKQLKLVMGELKAGQTKVATGSDIKEQGLLEVQEDRSEDELIVKVPGSAYSIANG 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4210g00080 1277 Gene3D - 1099 1231 - -
Pral4210g00080 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 474 IPR027417 -
Pral4210g00080 1277 SMART ultradead3 246 430 IPR014001 -
Pral4210g00080 1277 Pfam Helicase conserved C-terminal domain 596 699 IPR001650 -
Pral4210g00080 1277 CDD DEXHc_HARP_SMARCAL1 250 474 - -
Pral4210g00080 1277 CDD SF2_C_SNF 581 710 - -
Pral4210g00080 1277 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 259 423 IPR014001 -
Pral4210g00080 1277 SMART helicmild6 616 699 IPR001650 -
Pral4210g00080 1277 MobiDBLite consensus disorder prediction 881 907 - -
Pral4210g00080 1277 Coils Coil 52 72 - -
Pral4210g00080 1277 CDD HNHc 1168 1208 IPR003615 -
Pral4210g00080 1277 MobiDBLite consensus disorder prediction 892 906 - -
Pral4210g00080 1277 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 591 745 IPR001650 -
Pral4210g00080 1277 Pfam HNH endonuclease 1174 1205 IPR002711 GO:0003676|GO:0004519|GO:0008270
Pral4210g00080 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 751 IPR027417 -
Pral4210g00080 1277 Gene3D - 484 782 IPR027417 -
Pral4210g00080 1277 FunFam SNF2 DNA repair protein, putative 224 473 - -
Pral4210g00080 1277 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 48 1225 - -
Pral4210g00080 1277 Gene3D - 229 470 IPR038718 -
Pral4210g00080 1277 Pfam SNF2-related domain 268 518 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4210g00080 Pral-Chr4210 431336 444550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4210g00080 601 752 RAD5 or RAD16-like Gene Family AT1G11100 34.416 8.75e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4210g00080 SNF2_N 9.4e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4210g00080 K25861 - pcin:129320183 2057.72