Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4210g00057 ATGGATCTGCCGTTGTCCTCTCCTGCCAAATGCAGCTTGAAGCGCAAGCGCAAACAAGAATTCTCGGTAGATTTTTTGGGCGACGTTGTGACGCAAGTCAGTATTCTCAACTCCAGTTTATCATCGTCCCAGTCGGATCGCCTTGCGGCCAAGCGTGCTGTTGATGTTCTCTTTGCAGTCGGACATAATGAGGCAATTCTGAATAGTATGGTGGATTGCGGAGCTGTTCCTGCTTTGTTAAAATATCTGGAAGCACCTGAACCAGTTAGAGAAGGTGATGGTGTTCCCAAGCCTTACGAGCATGAGGTGGAAAAGGGGTGTCTATTGGTCCTTGAGAGTCTTGCTTTTAAACCGGAGCATCAACAACTCATTGTTGATGCTGGAGCTTTGTCCTATCTTATGGATTTGCTAAAGAGTTACAAGACCTGTGGCAATTCAAGGGCTCTTACTGGCCTTATAAGGAGAGCAGCTTATCTCATCGCAAGCCTTGTGCAGGAAAATGACAGCATTCAAACCCGTGTTAGGATGGAAGGTGGTATCCCTCCTCTGGTTGAATTGCTTGAATTTGATAATGTAAAGGTACAAAGGGCAGCTGCAGAGGCCTTACGTAGTCTTGCATTTAAAAATGATGAGAACAAAAACCAGATTGTCAGATGCAATGCACTGCCTACTCTTGTACTAATGCTTGGATCAGAGGATGCTGCCATACGTTTTGAAGCAGTTAGCTTTGTAGGTTGGCTTGTTAGAAATCTGGTCAACTCTTCTCCACACATAAGGAGGGAAGTTCTTCTAGCTGGTGCTCTCCGACCTATAATCGGATTGCTTAGGTCTGACTGGCCGGAGAGTCAGAGAGAAGCAGCTCTTTTAATTGGAATATTTGCTGGGACAGATTCTGATTGCAAGGCTCATATTGCTCAAAGAGGGGCTATCCAGCCACTGATTGACATGCTTAAGTCCCCAGATGAACAGCTTTGGAAAGCATCAGCATTTGCGCTTGGGAGACTGGCCCAGGACGCACACAATCAAGCTGGTATTGCTTATAATGGAGGTCTAGAGCTTCTACTCAACCTTCTTTGCTCCAAGGATGGACCTCTCCAACGTAATGCAGCCTTTGCTCTGTATGGTTTTGCTGATAATGAGGAGAATGTTGCGGATATTGTTAAGGTTGGTGGTGTTCAAAAACTACAGGATGGAGATTTCATAGATGGACCTGCCAAAGAGTATGTAGGAAAGACAATGAAAAGATTAGAGGAGAAAATGCATGGACAAGTGCTGAAACAGCTGATTTATCTTATGCGTTTTGGAGAAAAGGTTGTTCAAAGACGCGTGGCTTTAGCTCTTGCTCATCTATGTGCCCCGGATGATGGAAAATTTATTTTTGTTGACAACAATGGACTCAAATCCCTACTGGATCTTCTAGAATCTACAAATATTAAACAGAATCGCGAGGCTTCAATGGCACTTCACTCATTGGCTGTGAGAACCACATCTATCTCTCCCTCTGATGCTACTCCTCCATCCTCGACTTCCCAGGTATACTTGGGCGAGCAGTATATAAACAATCCTACATTTTCTGATATCATCTTTTTAGTTGAAGGTAAAGAGTTCTATGCTCACCGAATTTGTCTACTTGCTTCCTCTGATGCGTTTCGAGCAATGCTTGATGGTTTTTATTGGGAAAAGGAAGCGAAAGAAATACAGATTCCTAACGTTAAATGGGATGTCTTTGAAGTGATGATGAGATTTATTTACACGAGAAATGTAGATGTCAACTTGGATATTGCTCAAGATCTCCTAAGAGTCTATGATCAGTATCTTCTGGATGGTCTCAAGCGATCTTGTGAGTGTGCACTTGCTCAGGATATTTCGGTGGAAAATGTCTCTCTTATCTACGAGTTATCGGAGTCGTTTAATGCTATGGCATTGAGGCATGCATGTATATTCTTTTTGTTGGCTCAATATGACAAACTGAGCGCCGAACCATGGTATAGGTACCTCATCTGTCGCATTGTCCCAGATATACGTGAATTATTCGGAAGTTTACTCACGAAGCCTACTAGCGGAATATTGGATAAGAGTCCTAGTTGA 2088 0.4344 MDLPLSSPAKCSLKRKRKQEFSVDFLGDVVTQVSILNSSLSSSQSDRLAAKRAVDVLFAVGHNEAILNSMVDCGAVPALLKYLEAPEPVREGDGVPKPYEHEVEKGCLLVLESLAFKPEHQQLIVDAGALSYLMDLLKSYKTCGNSRALTGLIRRAAYLIASLVQENDSIQTRVRMEGGIPPLVELLEFDNVKVQRAAAEALRSLAFKNDENKNQIVRCNALPTLVLMLGSEDAAIRFEAVSFVGWLVRNLVNSSPHIRREVLLAGALRPIIGLLRSDWPESQREAALLIGIFAGTDSDCKAHIAQRGAIQPLIDMLKSPDEQLWKASAFALGRLAQDAHNQAGIAYNGGLELLLNLLCSKDGPLQRNAAFALYGFADNEENVADIVKVGGVQKLQDGDFIDGPAKEYVGKTMKRLEEKMHGQVLKQLIYLMRFGEKVVQRRVALALAHLCAPDDGKFIFVDNNGLKSLLDLLESTNIKQNREASMALHSLAVRTTSISPSDATPPSSTSQVYLGEQYINNPTFSDIIFLVEGKEFYAHRICLLASSDAFRAMLDGFYWEKEAKEIQIPNVKWDVFEVMMRFIYTRNVDVNLDIAQDLLRVYDQYLLDGLKRSCECALAQDISVENVSLIYELSESFNAMALRHACIFFLLAQYDKLSAEPWYRYLICRIVPDIRELFGSLLTKPTSGILDKSPS 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4210g00057 695 SUPERFAMILY POZ domain 516 619 IPR011333 -
Pral4210g00057 695 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 308 350 IPR000225 GO:0005515
Pral4210g00057 695 Gene3D Potassium Channel Kv1.1; Chain A 497 651 IPR011333 -
Pral4210g00057 695 Pfam BTB/POZ domain 518 620 IPR000210 GO:0005515
Pral4210g00057 695 Gene3D - 148 246 IPR011989 -
Pral4210g00057 695 Pfam Armadillo/beta-catenin-like repeat 174 206 IPR000225 GO:0005515
Pral4210g00057 695 Pfam Armadillo/beta-catenin-like repeat 209 242 IPR000225 GO:0005515
Pral4210g00057 695 SUPERFAMILY ARM repeat 40 397 IPR016024 -
Pral4210g00057 695 SMART BTB_4 525 622 IPR000210 GO:0005515
Pral4210g00057 695 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 213 IPR000225 GO:0005515
Pral4210g00057 695 Gene3D - 23 147 IPR011989 -
Pral4210g00057 695 ProSiteProfiles BTB domain profile. 525 592 IPR000210 GO:0005515
Pral4210g00057 695 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 23 686 IPR044282 -
Pral4210g00057 695 Gene3D - 411 496 IPR011989 -
Pral4210g00057 695 SUPERFAMILY ARM repeat 422 601 IPR016024 -
Pral4210g00057 695 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 349 391 IPR000225 GO:0005515
Pral4210g00057 695 SMART arm_5 338 378 IPR000225 GO:0005515
Pral4210g00057 695 SMART arm_5 209 249 IPR000225 GO:0005515
Pral4210g00057 695 SMART arm_5 297 337 IPR000225 GO:0005515
Pral4210g00057 695 SMART arm_5 255 295 IPR000225 GO:0005515
Pral4210g00057 695 SMART arm_5 167 207 IPR000225 GO:0005515
Pral4210g00057 695 SMART arm_5 63 116 IPR000225 GO:0005515
Pral4210g00057 695 SMART arm_5 117 165 IPR000225 GO:0005515
Pral4210g00057 695 SMART arm_5 453 493 IPR000225 GO:0005515
Pral4210g00057 695 Gene3D - 247 399 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4210g00057 Pral-Chr4210 334141 339210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4210g00057 155 392 U-box Gene Family AT5G67340 27.500 1.35e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pral4210g00057 BTB 4.9e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4210g00057 - - sind:105165291 865.914