Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4210g00054 ATGACGTCGACAACTACGTTTGGGCACATGAACAAGAAGGTTTGGCGTGGGACACATACCACCATATCTTTGAACTTGTGCATAATGGAAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGAGATCCTGTTATCCTTGGCAACCGATGTGCAGCTTATCTTAGAATATATTTTAACCAGGATTAGCAAATTCTTAAAAGACAGATCTCCATCAGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCCACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGCAGCTTGTGGACCTTCTAAGTAATTCAGTAAGATCGTACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCAGAGATGCTATCCTTTCAGGCCTTCAAGTTGATCCATTTAGCGACTCCTTGCGATCTTCACTTAAAAGTTTGGAAGTAGCATCTTCTAGTTTGATGGATATGAATAGACATGGACAGCCTGGGATGACTAGTCATGGACAACCAGAGCGCACTGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATACGAACCTGTTACAACCCCTTGCGGACATTCTTTTTGCCACTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTTATCAGTCCTAGAAGGTGTTCTATCAGTGTGACATTGAAGAGCATCATACAAAAGAACTTTCCCGAAGAATATGCCAAAAGGAAGCAAGAGCATGACAGTTTGACCAACTTTGGTGTGGATTTGATTCCTCTATTTGTCATGGATGTTGTCATGCCGTGTCAAAAGTTCCCACTCAATATATTTGAACCTCGATATAGGCTTATGGTCAGAAGAGTAATGGAAGGGAATCATAGGATGGGGATGGCTGTAATTGATTCTACAACAGGTTCTTTAGCTGAGTATGCTTGTGAAGTGGAAATCACAGAGTGTGAACCACTTCCGGATGGACGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATAATCCGATCTCGGAATCAGGATGGGTATCGTGTAGCAGAGGTTGAATGGATACAGGATATCATGCCTCCAGAAGGCAGTAGAGAGAGACAGTATTTACAGGAATTGACGTATGATGCAGCTGAAACAGCTCGATCATGGATAAGAAGAGCCAAAGAAGCAGCAAGAGTAAAACAAGATCATAGAAGACTTGAGAGAATCCAGTCTGTTGAACTGATGATGCCCAGTCTAAGAGATCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGCTGAGGCCTTTAGAAAGATTGGATCTTATGGGCTCAAGAAATACTGGAGAGAGGATTAGACGTGGACTGAATTATCTGCGAGCAGAGGAACAACGCTGCAGAATTCAGTAA 1461 0.4216 MTSTTTFGHMNKKVWRGTHTTISLNLCIMETCHFGRIGWKRQSTFTQEQIASNLEILLSLATDVQLILEYILTRISKFLKDRSPSASEYKPLSGLDPTIHAELGLKDAEQLVDLLSNSVRSYLLKANALFLLEKYEKARDAILSGLQVDPFSDSLRSSLKSLEVASSSLMDMNRHGQPGMTSHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLFISPRRCSISVTLKSIIQKNFPEEYAKRKQEHDSLTNFGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRVMEGNHRMGMAVIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESRRRFRIIRSRNQDGYRVAEVEWIQDIMPPEGSRERQYLQELTYDAAETARSWIRRAKEAARVKQDHRRLERIQSVELMMPSLRDPERFSFWLASLSKLRPLERLDLMGSRNTGERIRRGLNYLRAEEQRCRIQ 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4210g00054 486 ProSiteProfiles Lon N-terminal domain profile. 275 478 IPR003111 -
Pral4210g00054 486 PANTHER RING FINGER PROTEIN 127 77 478 - -
Pral4210g00054 486 Pfam ATP-dependent protease La (LON) substrate-binding domain 278 476 IPR003111 -
Pral4210g00054 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 273 IPR013083 -
Pral4210g00054 486 ProSiteProfiles Zinc finger RING-type profile. 194 232 IPR001841 -
Pral4210g00054 486 SMART ring_2 194 231 IPR001841 -
Pral4210g00054 486 Gene3D - 276 378 IPR046336 -
Pral4210g00054 486 SMART lon_5 277 478 IPR003111 -
Pral4210g00054 486 SUPERFAMILY PUA domain-like 278 476 IPR015947 -
Pral4210g00054 486 CDD RING-HC_LONFs_rpt2 191 235 - -
Pral4210g00054 486 Gene3D Tetratricopeptide repeat domain 100 172 IPR011990 GO:0005515
Pral4210g00054 486 SUPERFAMILY RING/U-box 188 256 - -
Pral4210g00054 486 Pfam Zinc finger, C3HC4 type (RING finger) 194 231 - -
Pral4210g00054 486 SUPERFAMILY TPR-like 101 163 IPR011990 GO:0005515
Pral4210g00054 486 ProSitePatterns Zinc finger RING-type signature. 209 218 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4210g00054 Pral-Chr4210 282578 288584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4210g00054 185 235 C3H Transcription Factor Family AT1G74990 35.185 4.33e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4210g00054 - - pcin:129321082 754.977